User: Mr Locuace

gravatar for Mr Locuace
Mr Locuace100
Reputation:
100
Status:
Trusted
Location:
Chile
Last seen:
2 months, 2 weeks ago
Joined:
4 years, 4 months ago
Email:
l*******@gmail.com

Molecular biologist by training that recently joined a Human Genomics group.

Posts by Mr Locuace

<prev • 61 results • page 1 of 7 • next >
0
votes
2
answers
185
views
2
answers
Comment: C: Retrieve genomic physical coordinates of 3'UTR for set of genes
... Great, thanks @vkkodali ! ...
written 3 months ago by Mr Locuace100
0
votes
2
answers
185
views
2
answers
Comment: C: Retrieve genomic physical coordinates of 3'UTR for set of genes
... Thanks very much @vkkodali ! But how to do it for a large list of GeneIDs? ...
written 3 months ago by Mr Locuace100
4
votes
2
answers
185
views
6 follow
2
answers
Retrieve genomic physical coordinates of 3'UTR for set of genes
... Hello, I have a list of human genes and I'd like to retrieve the physical coordinates (GRCh37/hg19 assembly) of their 3'UTRs. Are you aware of any software that can do that? Thanks ! ...
3'utr written 3 months ago by Mr Locuace100 • updated 3 months ago by vkkodali1.9k
0
votes
0
answers
182
views
0
answers
Find gene affected by specific regulatory region
... I have some some SNPs mapping regulatory elements (TFBS, enhancer, promoter-flanking region) that are 72 -45 Kb away from a particular gene A. I want to know if there is a bioinformatic tool that predicts whether such elements affect the transcription of gene A. Thanks ! ...
regulation promoter enhancer snp written 4 months ago by Mr Locuace100
0
votes
1
answer
294
views
1
answers
Comment: C: ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.g
... Thank you very much @ATpoint ! ...
written 7 months ago by Mr Locuace100
0
votes
1
answer
294
views
1
answers
Comment: C: ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.g
... Thank you @Sean Davis !. But what about the single file that says "PAIRED"?. How to know if it is actually single-end or a merge between read1 and read2 paired-ends? ...
written 7 months ago by Mr Locuace100
2
votes
1
answer
294
views
1
answer
ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.gz X_2.fastq.gz
... Hello, I am downloading some data from this project from ENA: https://www.ebi.ac.uk/ena/data/search?query=PRJNA494719 There are cases where I do not understand the format. For instance, this is supposed to be a single-end file (it says "SINGLE"): https://www.ebi.ac.uk/ena/data/view/SRX4809217 bu ...
fastq paired-end single-end ena written 7 months ago by Mr Locuace100 • updated 7 months ago by Sean Davis26k
0
votes
0
answers
243
views
0
answers
Convert from plink or vcf to bgl format
... Hello, I'd like to convert a vcf or bed/bim/fam file to Beagle (.bgl) format. Thanks ! ...
vcf bgl plink written 8 months ago by Mr Locuace100
3
votes
1
answer
238
views
1
answer
Convert physical positions from Hg18 to Hg19
... Hello, I have a file like this one (but with thousands of rows): A B C D 994 437756 1 437756 988 204037 1 641793 982 89637 1 731430 976 48461 1 779891 970 30768 1 810659 964 21334 1 831993 A: score B: size of the genomic region in base pairs C: chromosome ...
liftover written 10 months ago by Mr Locuace100 • updated 10 months ago by ATpoint31k
0
votes
0
answers
358
views
0
answers
Phasing genotype likelihood data and merging them with phased genotype calls data.
... I have 3 sets of genotypes: 1. A multiethnic panel of phased 1000G Phase 3 genotypes in IMPUTE2 format (.hap). 2. Genotype likelihoods (GL) for 40 whole-genotypes of a population A in .vcf format (field FORMAT=GL) 3. An array of about 600.000 SNP (30X coverage) from a population B, which is geneti ...
genotype likelihood phasing genotype calls written 11 months ago by Mr Locuace100

Latest awards to Mr Locuace

Popular Question 3 months ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Popular Question 3 months ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Popular Question 3 months ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Popular Question 7 months ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Voter 10 months ago, voted more than 100 times.
Popular Question 13 months ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Popular Question 14 months ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Popular Question 16 months ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Popular Question 18 months ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Popular Question 18 months ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Popular Question 18 months ago, created a question with more than 1,000 views. For Lift over based on physical position from GRCh37 build 137 to GRCh37 build 132
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Getting derived alleles from alternate/reference allele data
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Reference & alternative alleles extracted from 1000G, Phase 3
Scholar 2.1 years ago, created an answer that has been accepted. For A: Reference & alternative alleles extracted from 1000G, Phase 3
Supporter 3.8 years ago, voted at least 25 times.
Autobiographer 4.3 years ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1377 users visited in the last hour