User: anithanagaraj93

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Posts by anithanagaraj93

<prev • 32 results • page 1 of 4 • next >
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freebayes running error on public data
... Hi, I have 7 files downloaded from sra-download link (it tells those are bam files only), so started running freebayes for these files. I am getting the following error for all 7 samples, Please help me out to solve the error. These are public data. [W::sam_read1] Parse error at line 1 terminate c ...
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Comment: C: Platypus variant caller error
... Actually, it builds properly but throws an error when I start running Platypus. ...
written 6 weeks ago by anithanagaraj930
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Platypus variant caller error
... Hi, I am trying to install Platypus on my server, It's building properly telling "Finished building Platypus", but after this when I start to call platypus by: **python Platypus.py** it throws an error **Traceback (most recent call last): File "Platypus.py", line 9, in import runner File ...
software error variantcaller platypus written 6 weeks ago by anithanagaraj930
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Aedes aegypti variant calling
... Hi, Everyone I am preparing a pipeline to call variants on Aedes aegypti, so which tools are suitable for that (previously I decided to ran GATK). Some paper describes freebayes is best. I want to download Freebayes version 1.2.0, it asks lots of dependencies, can anyone tell the full package of th ...
genome next-gen snp written 7 weeks ago by anithanagaraj930
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Freebayes installation error
... Hi everyone, I am installing freebayes 1.3.2 in my server, but it throws an error: "**g++: error: unrecognized command line option ‘-std=c++14**’". But when check my gcc version it shows gcc (GCC) 7.3.0 version. can you suggest me how to resolve this error, it would be a great help for me. Thank ...
software error written 7 weeks ago by anithanagaraj930
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Answer: A: fetch particular columns from csv files
... Thank you for your answers ...
written 4.0 years ago by anithanagaraj930
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Comment: C: fetch particular columns from csv files
... Thank you for your patience. I tried with this regex format to match column that has value(value), "\d\.\d+[(\[]\d\.\d+\–\d\.\d+[)\]]". From this query its fetching whole rows, but i need a columns that only match with my query. ...
written 4.1 years ago by anithanagaraj930
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fetch particular columns from csv files
... i have file of 10000 rows, consist some values like below.. i need to fetch the columns only consist of rs, value(0-9), but the problem is rs is not always in first column, column will be differ. so how solve this problem. please help me out rs1 0.5(0.3-1.5) 0.08 rs2 1.2(1.5-5.0) 0.05 snp1 rs6 ...
perl python written 4.1 years ago by anithanagaraj930
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ftp links for pmids/pmcids
... How to get ftp direct links for pmids except those are in ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/file_list.pdf.txt.. Thank you ...
bioinformatics pubmed pmc written 4.2 years ago by anithanagaraj930
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Comment: C: full text retrieval from pmc database
... Hi, Thanks for your reply Ftp links are not avilable for all pmids or pmcids thats why i am asking thatany alternative methods/softwares are available for downloading articles. Thank you ...
written 4.3 years ago by anithanagaraj930

Latest awards to anithanagaraj93

Popular Question 4.0 years ago, created a question with more than 1,000 views. For calculate average value for multiple rows with different values
Popular Question 4.0 years ago, created a question with more than 1,000 views. For full text retrieval from pmc database
Popular Question 4.0 years ago, created a question with more than 1,000 views. For free article download from pubmed or pmc
Popular Question 4.0 years ago, created a question with more than 1,000 views. For pdf table parsing
Popular Question 4.0 years ago, created a question with more than 1,000 views. For fetch particular columns from csv files
Popular Question 4.0 years ago, created a question with more than 1,000 views. For joining/merge of two csv files

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