User: mittu1602

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mittu160250
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Posts by mittu1602

<prev • 46 results • page 1 of 5 • next >
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Why GC-content normalization for CNV analysis?
... Hello all, I am working on CNV analysis tools of which some tools perform GC-normalization on tumor samples or look for mappablity read count on tumor samples. Usually this is done in the absence of control samples. It would be helpful if anyone can explain or share something relevant as to **ho ...
illumina ngs cnv written 5 hours ago by mittu160250 • updated 5 minutes ago by Jan Oosting790
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Comment: C: How to normalize and pool normal human samples?
... Yes and also to use it as a further reference of control sample ...
written 11 days ago by mittu160250
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How to normalize and pool normal human samples?
... I have four healthy samples which are hybridization capture based of targeted regions from Illumnia machine. I need to pool and normalize them to use these samples as "one single control sample" any simpler way to do it. I am learning. Thank you ...
illumina ngs written 11 days ago by mittu160250
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Comment: C: determine overlaps of chromosome coordinates from two different files
... I am aware of extracting headers and later adding it, but there are 50 headers which are in the middle of the file some thing like this: ===> file1 <=== chr10 25689 25698 chr1 256987 569846 ===>file2<=== chr6 78965 789577 and so on..! it will be difficult to remov ...
written 16 days ago by mittu160250
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Comment: C: determine overlaps of chromosome coordinates from two different files
... sorry I need those headers, as mentioned in the question: (since its a compilation of 50 files the header names are also needed for reference) ...
written 16 days ago by mittu160250
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determine overlaps of chromosome coordinates from two different files
... I have two bed files: file1: (since its a compilation of 50 files the header names are also needed for reference) ==> /home/blade/1-processedData/sample.coverageExon.csv <== space start end V4 avgCoverage chr10 133525740 133525741 CYP2E1 475 chr10 133527062 133527065 CYP ...
bed intersetct written 16 days ago by mittu160250 • updated 16 days ago by Alex Reynolds21k
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Comment: C: awk command in shell script
... Hi, I have already accepted the answer. Thank you 😊 ...
written 21 days ago by mittu160250
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Comment: C: save the file_name according to the column headers
... does it need any alterations while running through shell script? because it shows errors :( ...
written 21 days ago by mittu160250
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(Closed) awk command in shell script
... I have an awk command which runs well on terminal: this awk command creates diffrent file according to their column header. awk command: `for((i=2;i<5;i++)); do awk -v i=$i 'BEGIN{OFS=FS="\t"}NR==1{n=$i}{print $1,$i > n".txt"}' ${Batch}.result.txt; done` the same command when incorporated i ...
awk shell linux written 21 days ago by mittu160250 • updated 21 days ago by Pierre Lindenbaum101k
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Comment: C: save the file_name according to the column headers
... Thanks it worked very fine. :) ...
written 21 days ago by mittu160250

Latest awards to mittu1602

Scholar 22 days ago, created an answer that has been accepted. For A: SAMtools installation on windows
Popular Question 8 weeks ago, created a question with more than 1,000 views. For pathway database KEGG and REACTOME

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