User: mittu1602

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mittu160220
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1 year, 9 months ago
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Posts by mittu1602

<prev • 29 results • page 1 of 3 • next >
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Answer: A: How to compare two files on the basis of Two IDs
... You can also use `$ bedtools intersect -wao -a file1.bed -b file2.bed -o Output.bed` ...
written 15 hours ago by mittu160220
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Comment: C: targeted bam file from database for breast cancer
... Thank you for your response. Yes I am aiming to look at copy number of ERBB2 from the mapped reads. This data should help me with my work. ...
written 17 hours ago by mittu160220
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targeted bam file from database for breast cancer
... Hello all, Could anyone help me any database or website from where I can download one .bam file with following criteria: 1. Breast cancer (ERBB2 positive) 2. Targeted sequencing data Thank you ...
targeted ngs cancer written 3 days ago by mittu160220 • updated 3 days ago by Kevin Blighe1.3k
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Answer: A: How to create a pooled normal exome sample?
... Hi I would like to know if there was alternate solution for your normalization because I am trying to do similar type of work. Thank you ...
written 18 days ago by mittu160220
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Comment: C: Normalizing Human Samples in .bam format
... I have 4 control samples and to run an analysis I need these 4 controls as "one single sample" which needs to be normalized. ...
written 18 days ago by mittu160220
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Comment: C: Which tool is recommended for detecting CNVs in whole exome sequencing?
... There are many tools for CNV detection but it depends on the type of your data. Some below mentioned tools list need control or normal samples and if that is not available check for the manuals on how to analyse without providing control. They are not specifically designed for whole exome sequencing ...
written 18 days ago by mittu160220
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Normalizing Human Samples in .bam format
... Hello All, On going through some R packages like **DeSeq2** for normalizing data I couldn’t get a normalized output. I would like to know if there is any other alternate way to normalize these human samples which are from Illumnia sequencing platform, paired-end data and in .bam format. Thank you ...
assembly next-gen illumnia sequencing written 18 days ago by mittu160220 • updated 18 days ago by Devon Ryan70k
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What tools can be used for analysis of structural variants in targeted sequencing data?
... What are possible tools that can be used for analysis of structural variants and easy to interpret in targeted sequencing data approach without providing control samples (Human samples) ? Thank you. ...
ngs snp cnv targeted sequencing snv written 24 days ago by mittu160220 • updated 24 days ago by Sparrow_kop90
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Comment: C: CNV calling with Control-FREEC? Significant calls
... Thank you for taking out time and updating it. I hope it helps me. ...
written 24 days ago by mittu160220
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Comment: C: CNV calling with Control-FREEC? Significant calls
... Hello, I would like to know if any relevant answers was obtained for this issue. because I am facing the same type of issue for CNV analysis. ...
written 5 weeks ago by mittu160220

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