User: yinzl2007

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yinzl200720
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China
Last seen:
3 years, 6 months ago
Joined:
4 years, 10 months ago
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y********@163.com

Posts by yinzl2007

<prev • 14 results • page 1 of 2 • next >
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Comment: C: Batch effect of RRBS data (Methylation): Elimination and Pipleline
... Hi, Did you get any further with this? I have the same problem, and was wondering if you had the code you eventually used? ...
written 3.5 years ago by yinzl200720
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Answer: A: Analysis Pipelines for MBD-Seq Data
... Do you have the methylation level of the genome regions? and what's its format? Maybe you can search some patterns in one group , for examle you can see which CpG island have a higher methylation level in all seven samples. and then you can see the difference between the two group. ...
written 4.6 years ago by yinzl200720
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Comment: A: Why there are some genes have a same transcription start position?
... The line of this file is not a gene exactly, every line represent a transcript of a geneSymbol. You can link the table knownGene and the mm10.kgXref.kgID (via knownGene.name), and you can see the genesymbol in table kgXref. ...
written 4.8 years ago by yinzl200720 • updated 10 months ago by RamRS30k
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Why there are some genes have a same transcription start position?
... hello biostarters, I downloaded a file from uscs about the genes and gene predictions, the select condition is shown in the first picture. Every line in the output file represente a gene, however, I found that there are more than one gene have the same txStart(Transcription start position), as show ...
gene transcription start position written 4.9 years ago by yinzl200720
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Comment: C: histone modification and DNA methylation in gene regulation ?
... Thanks for your reply. That's the first time I know the difference between promoter and the gene body actually. ...
written 4.9 years ago by yinzl200720 • updated 10 months ago by RamRS30k
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basic standard gene regulation network of mouse
... Hi, I’m reading a paper about how to improve the accuracy of yeast gene regulation network. I want to use this method on mouse, and to verify the affect of this method, so I need a basic gene regulation network of mouse. Where can I find a basic GRN? ...
mouse grn written 4.9 years ago by yinzl200720
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histone modification and DNA methylation in gene regulation ?
... The epigenetic includes histone modification and methylation and so on, and the epigenetic data can play some role on the gene regulation. I have seen some papers about the about the histone modification data play a role in gene regulation network, but I haven’t seen many papers about the research o ...
dna methylation histone modification written 4.9 years ago by yinzl200720 • updated 4.9 years ago by jotan1.2k
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Comment: C: How to find the gene that a site of mouse genome belongs to?
... Thanks for your answer! The tools on line can help me check the gene on line. What's more, I want to deal with my data in my local server. Is there any map tools (or software package) I can use in my local server? So I can deal with my data in my own computer. It's better in Python laguage. Thank y ...
written 4.9 years ago by yinzl200720 • updated 10 months ago by RamRS30k
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Comment: C: How to find the gene that a site of mouse genome belongs to?
... Thanks for your answer! The tools on line can help me check the gene on line. What's more, I want to deal with my data in my local server. Is there any map tools (or software package) I can use in my local server? So I can deal with my data in my own computer. It's better in Python laguage. Thank y ...
written 4.9 years ago by yinzl200720 • updated 10 months ago by RamRS30k
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Comment: C: How to find the gene that a site of mouse genome belongs to?
... The format is .fa ...
written 4.9 years ago by yinzl200720 • updated 10 months ago by RamRS30k

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