User: IrK

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IrK50
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Australia
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5 hours ago
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4 years, 2 months ago
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Posts by IrK

<prev • 46 results • page 1 of 5 • next >
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Comment: C: Does EnhancedVolcano() supports crosstalk()?
... the difference is that `SharedData$new(...)` provides interactivity between two objects. click on a dot from the plot and get the information of this dot in the table highlighted and vice versa click on a row in the table and the dot that represents this row in the plot is highlighted. At the mom ...
written 16 hours ago by IrK50
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Comment: A: Does EnhancedVolcano() supports crosstalk()?
... Thanks, for your prompt response. Unfortunately, this is not what was not working. The issue is that the output `data_shared`, `data_shared = SharedData$new(data1)` from `SharedData$new()` is not seen properly in `EnhancedVolcano(data_shared)`. I assume that `EnhancedVolcano()` doesn't recog ...
written 3 days ago by IrK50
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Comment: C: Does EnhancedVolcano() supports crosstalk()?
... between All credit to you, this is amazing package !! ...
written 4 days ago by IrK50
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Comment: C: Does EnhancedVolcano() supports crosstalk()?
... in a nutshell, I am trying to make interactive visualization, so my Volcano Plot should be able to "communicate" with the table and vice versa, basically to show information on a plot or table. After some research, I ended up trying `crosstalk`, which is quite new to me, but I managed to make it wo ...
written 4 days ago by IrK50
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Does EnhancedVolcano() supports crosstalk()?
... Hello, I posted a question at the StackOverflow [please see my question](https://stackoverflow.com/questions/60182885) about an error I am getting when I try to `crosstalk` volcano plot generated by `EnhancedVolcano` package. I received a reply that it is not supported, although documentation says ...
R enhancedvolcano ggplot crosstalk written 4 days ago by IrK50
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Comment: C: Network modeling of data produced by mixOmics (R) in Cytoscape
... I found the igraph tutorial today, will try it out :) thanks for the prompt reply. ...
written 8 months ago by IrK50
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Network modeling of data produced by mixOmics (R) in Cytoscape
... Hey guys, I'd like to visualize a network / relationships between two types of data(transcriptome data vs promote data) The network() function (Relevance Network) of the mixOmics R package suggests to save results as the graph object that can be used by Cytoscape to improve visualization. I've che ...
network mixomics multiomics cytoscape written 8 months ago by IrK50
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Comment: C: Gene-based clustering of RNA-seq data
... Thank you so much for detailed clarification, Kevin, appreciate it! ...
written 20 months ago by IrK50
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Gene-based clustering of RNA-seq data
... Hey everyone, I am trying to understand the gene-based clustering, and what strategy can be applied to see what genes fall into the same cluster based on their expression profile. I have RNA-seq data that has been analyzed with DESeq2 package for differentially expressed genes. I selected rlog n ...
clustering gene-based clustering deseq2 rna-seq written 20 months ago by IrK50 • updated 20 months ago by Kevin Blighe54k
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Cogena framework for RNA-seq / minimum sample size
... Dear Zhilong Jia, I am wondering if Cogena framework is a statistically appropriate method for co-expressed gene set enrichment analysis of RNA-seq dataset, considering that input dataset (gene counts) is appropriately normalized? What is the minimum samples number that can be used? Would 3KOs v ...
cogena tool drug repositioning pathway written 20 months ago by IrK50

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Popular Question 19 months ago, created a question with more than 1,000 views. For How to find if a string contains non overlapping block of repeated units? Python
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Popular Question 2.9 years ago, created a question with more than 1,000 views. For TMM normalization for RNA seq data with three replicates (2 samples)

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