User: manojkumarbioinfo

Reputation:
20
Status:
New User
Location:
India
Last seen:
9 months, 1 week ago
Joined:
2 years, 6 months ago
Email:
m****************@gmail.com

Posts by manojkumarbioinfo

<prev • 25 results • page 1 of 3 • next >
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Comment: C: Calculate the Quality of Bases
... sure i will look into it. ...
written 9 months ago by manojkumarbioinfo20
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Comment: C: Calculate the Quality of Bases
... ya that what i'm doing. but i want to know if there is any easier way than this. say if i have a 1000 variants like that we cant able to check them manually. ...
written 9 months ago by manojkumarbioinfo20
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Comment: C: Calculate the Quality of Bases
... i have used 5 different variant callers and merged every out put them i compared with my known ones, from that i missed about 86 variants which is not detected by any of my variant callers. so i wish to find whats the reason for missing those region. i checked with the depth, of those region it seem ...
written 9 months ago by manojkumarbioinfo20
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Comment: C: Calculate the Quality of Bases
... i'm not writing my own variant caller. i'm bench marking the available tools. for that i'm using my own sequence where i know the exact variant. but available tools are missing certain variants so i wish to find out the reason for missing variants. i checked the depth of those region it looks good b ...
written 9 months ago by manojkumarbioinfo20
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Comment: C: Calculate the Quality of Bases
... i just want to filter the variants based on the quality of the base and their depth. ...
written 9 months ago by manojkumarbioinfo20
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Calculate the Quality of Bases
... Hi, I want to calculate the quality of base using a bed file. for example **i have aligned my raw reads and i want to calculate the quality of base found in chromosome 1 at particular position**. is there any tools for calculating the quality of user desired bases. if yes kindly suggest me the be ...
next-gen alignment sequencing written 9 months ago by manojkumarbioinfo20 • updated 9 months ago by prasundutta87170
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Error while aligning the sequence using Novoalign
... Hi, I'm getting a error name base quality out of range . while aligning my reads using Novoalign. **Command used for aligning** novoalign -d Reference/Novoalign/hg37.nix -f data/SRR504483_1.fastq data/SRR504483_2.fastq -i 200,50 -o SAM **Error message** Error: Base quality out of range for file ...
next-gen ngs alignment written 13 months ago by manojkumarbioinfo20
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Comment: C: SVM based VCF filter
... i just wanted to filter out my variants based on true positive and false positive. i have a separate data of true positive one . now i want to filter out my variants.@DevonRyan ...
written 16 months ago by manojkumarbioinfo20
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Comment: C: SVM based VCF filter
... @Devon Ryan Yes that what i need ...
written 17 months ago by manojkumarbioinfo20
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SVM based VCF filter
... Hi, I would like to know is there any free SVM based tools for filtering my VCF file. if its there kindly me tell me. ...
vcf ngs svm written 17 months ago by manojkumarbioinfo20 • updated 17 months ago by Mike980

Latest awards to manojkumarbioinfo

Popular Question 13 months ago, created a question with more than 1,000 views. For Incompatible contigs No overlapping contigs found.
Popular Question 13 months ago, created a question with more than 1,000 views. For Difference Between GATK, Freebayes and SAMtools mpileup
Scholar 2.3 years ago, created an answer that has been accepted. For A: Difference Between GATK, Freebayes and SAMtools mpileup

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