User: becko

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becko0
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Posts by becko

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Comment: C: Draw lines connecting pair of atoms in PyMOL
... Thanks. How can I show the bonds I just created in the cartoon representation? They only appear to show in the liner representation of the molecule. ...
written 28 days ago by becko0
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Draw lines connecting pair of atoms in PyMOL
... I have several pair of atoms and I wish to draw some lines between them PyMOL. The resulting image should be something like this: ![enter image description here][1] Note that some lines are of a color and other lines are of a different color. How can I achieve this kind of graphic in PyMOL (or an ...
pymol written 28 days ago by becko0 • updated 28 days ago by natasha.sernova3.6k
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Comment: C: How Can I Draw A Rod In Pymol?
... Hey, did you figure this out? ...
written 4 weeks ago by becko0
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How to extract gene names for a metabolic pathway from KEGG?
... I need the get the list of gene names involved in glycolysis (to put an example). Not manually, I need to do this in a script. Ideally with Python. I think KEGG is the proper database to do this, but any other (free) suggestion would do. How can I do it? ...
metabolism python written 2.1 years ago by becko0 • updated 2.1 years ago by lmanohara9920
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Module to RMSD two proteins with Python?
... I have two protein structures in PDB format. The two structures refer to two conformations of the same protein. I want to calculate the RMSD between them. Is there Python module that will allow me to do this? ...
python protein-structure written 3.9 years ago by becko0 • updated 2.7 years ago by Eric T.2.5k

Latest awards to becko

Great Question 24 months ago, created a question with more than 5,000 views. For Module to RMSD two proteins with Python?
Popular Question 24 months ago, created a question with more than 1,000 views. For Module to RMSD two proteins with Python?
Popular Question 3.6 years ago, created a question with more than 1,000 views. For Module to RMSD two proteins with Python?

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