User: saj98

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saj9840
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5 days, 10 hours ago
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1 year, 9 months ago
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s****@scarletmail.rutgers.edu

Posts by saj98

<prev • 76 results • page 1 of 8 • next >
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Comment: C: update SAM sort tools to the newest version
... Shall I remove the old version? Or just I should go forward and do installation. ...
written 5 days ago by saj9840
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update SAM sort tools to the newest version
... Hello every one I have SAM sort tools version 0.1.19-96b5f2294a. Can I update it t the newest version? Thanks ...
ubuntu written 5 days ago by saj9840
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Comment: C: Could not locate a HISAT2 index to basename
... Yes, I corrected the path, now is running Thank you ...
written 12 days ago by saj9840
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Could not locate a HISAT2 index to basename
... Hello everyone I am first time trying to use HISAT, I am getting the following error message I am using the following command: `/usr/bin/hisat2 -p 10 --dta -x usr/bin/rn6/genome -1 Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R1_001.fastq.gz -2 Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R2_001.fastq. ...
rna-seq written 12 days ago by saj9840 • updated 12 days ago by nancydong2060
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Comment: C: HISAT2 software installation
... Hello Does conda work with linux? Thanks for your help ...
written 14 days ago by saj9840
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Comment: C: HISAT2 software installation
... Sorry, I am new to to HISAT2. What do you mean a valid input? Could you explain? I used `hisat2 -h`, but it gave me `hisat2: command not found ` ...
written 14 days ago by saj9840
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HISAT2 software installation
... Hello everyone I am trying to install HISAT2, so I used the following command: `wget ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.0.4-Linux_x86_64.zip` Then I used: `unzip hisat2-2.0.4-Linux_x86_64.zip` then I used `cd hisat2-2.0.4` Then I used `./hisat2`. It came fine, but at t ...
rna-seq written 14 days ago by saj9840 • updated 14 days ago by nancydong2060
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Comment: C: Tophat software error
... I am so sorry for misunderstood, I did the following command The command: `$ wc -l Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R1_001.fastq` Then I got the following: `472646376 Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R1_001.fastq` The the second line: `$ wc -l Documents/Shaima/Seq/Pros/S/WS02 ...
written 15 days ago by saj9840
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Comment: C: Tophat software error
... Hello Thank you so much for your help, I tried to follow your command, but I got the following error. Could you please check my mistake. I appreciate your time $ tophat -p 10 -o WS001_R1_thout --library-type=fr-firststrand -G Documents/Shaima/Seq/Pros/S/Rn6/Rn6.gtf Documents/Shaima/Seq/Pros/S/Rn6 ...
written 15 days ago by saj9840
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Tophat software error
... Hello every one I used the following tophat command to get thout file. tophat -p 5 -o WS001_R1_thout --library-type=fr-firststrand -G Documents/Shaima/Seq/Pros/S/Rn6/Rn6.gtf Documents/Shaima/Seq/Pros/S/Rn6/Rn6_index Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R1_001.fastq Documents/Sha ...
rna-seq written 15 days ago by saj9840 • updated 15 days ago by Ram12k

Latest awards to saj98

Popular Question 11 weeks ago, created a question with more than 1,000 views. For How can I detect lncRNA?
Scholar 4 months ago, created an answer that has been accepted. For C: ggplot2 error message
Popular Question 10 months ago, created a question with more than 1,000 views. For How can I detect lncRNA?

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