User: mmfansler

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mmfansler20
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Posts by mmfansler

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Comment: C: What Is An Omnibus Test?
... Another good example of an omnibus hypothesis test is the chi-square test for categorical data. Taking independence of the categorical variables as the null hypothesis, a significant result only tells you that independence is improbable, but does not yield any information about which levels are sig ...
written 6 days ago by mmfansler20
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Answer: A: paired reads have different names (bwa-mem)
... It appears that when the FASTQ file was dumped from the SRA file, [the `-I | --readids` option was used in **fastq-dump**][1]. Unfortunately, BWA has the (overly strict) requirement that paired reads must both have the same order in the file and a completely identical read name. You could process ...
written 7 months ago by mmfansler20
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Comment: C: paired reads have different names (bwa-mem)
... Interleaved files are not a problem for BWA - that's what the `-p` flag is for. ...
written 7 months ago by mmfansler20
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Answer: A: tophat install problem
... Ran in to exactly the same error, but neither of the above were the issue for me. Perhaps unique to the fact that I have boost installed through macports, my system only has libboost_system-mt in the lib directory and was not being recognized. Adding a soft link for libboost_system in the same direc ...
written 2.0 years ago by mmfansler20

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