User: olive1212

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olive121260
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Posts by olive1212

<prev • 12 results • page 1 of 2 • next >
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Comment: C: MSF Data Analysis
... Thank you for all the information! When I load the files into PD (screenshot), they do show a list of proteins and it gives the indicated #PSM. However, it does not give any confidence information generated by peculator nor the coverage or #Peptides, which makes the list of proteins fairly useless. ...
written 3 months ago by olive121260
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MSF Data Analysis
... I am trying to work with MSF files (and RAW files) downloaded from a manuscript via PRIDE/ProteomeXchange. I am just trying to access the complete proteome (not just peptide sequence) with confident/coverage from the file. Unfortunately, the Thermo Proteome Discoverer Software used to generated the ...
proteomics proteome discoverer msf thermo written 3 months ago by olive121260
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Comment: C: survfit(Surv()) P-value interpretation for 3 survival curves?
... Amazing, thank you so much!! ...
written 6 months ago by olive121260
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NaN in Z.score data from TCGA
... I have downloaded RNA-Seq expression z.scores from TCGA datasets on cBP. For some genes, they have a z.score value of NaN. Does that mean that the expression level of that gene was 0? Or does it mean something else? I couldn't seem to find the answer online, thanks for your help! ...
tcga zscore written 6 months ago by olive121260
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survfit(Surv()) P-value interpretation for 3 survival curves?
... Using the survfit(Surv()) functions in R, I am generating survival curves for a gene of interest, using z.scores to label patient data as upregulated, downregulated, or "regulated". However, using defaults to generate p-value only returns a single p-value. How should I interpret this p-value in ref ...
R survfit surv survival curves written 6 months ago by olive121260 • updated 6 months ago by Kevin Blighe56k
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Answer: A: Errors with SRA-toolkit: not enough space on the disk. (112)
... I was trying to save to hard drives with Fat32 file system, which has wont save files >4Gb. Reformatted the hard drive, and the files downloaded. Thank you for everyone' help! ...
written 7 months ago by olive121260
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Comment: C: Errors with SRA-toolkit: not enough space on the disk. (112)
... The sequences I am trying to download are not on ENA (yet?) ...
written 7 months ago by olive121260
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Comment: C: Errors with SRA-toolkit: not enough space on the disk. (112)
... The hard drive reports having plenty of space, and all incomplete files have been removed (I checked for hidden files as well). ...
written 7 months ago by olive121260
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Comment: C: Errors with SRA-toolkit: not enough space on the disk. (112)
... It is set to the correct hard drive ...
written 7 months ago by olive121260
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Errors with SRA-toolkit: not enough space on the disk. (112)
... ***SOLVED (09.08.19)***: **I was trying to save to hard drives with Fat32 file system, which has wont save files >4Gb. Reformatted the hard drive, and the files downloaded. Thank you for everyone' help!** I keep having issues when downloading datasets with SRA. This dataset I tried to download ...
software error written 7 months ago by olive121260

Latest awards to olive1212

Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Errors with SRA-toolkit: not enough space on the disk. (112)
Scholar 7 months ago, created an answer that has been accepted. For A: Errors with SRA-toolkit: not enough space on the disk. (112)

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