User: ashamscsoft

gravatar for ashamscsoft
ashamscsoft10
Reputation:
10
Status:
New User
Location:
Last seen:
5 months ago
Joined:
1 year, 11 months ago
Email:
a**********@gmail.com

Posts by ashamscsoft

<prev • 75 results • page 1 of 8 • next >
0
votes
0
answers
224
views
0
answers
rf-score protein-ligand complex
... Hello all, I have a doubt in calculating rf-score for protein-ligand complexes. I have taken the scripts from http://chemistry.st-andrews.ac.uk/staff/jbom/group/RF-Score.html. This is the script for PDBBind benchmark dataset. My doubt is they have given the csv file as input for both core07 and ref ...
rf-score protein-ligand complex written 5 months ago by ashamscsoft10 • updated 4 months ago by Biostar ♦♦ 20
2
votes
0
answers
163
views
0
answers
Physiochemical properties of protein
... I have a doubt in physio-chemical properties of protein. My doubt is, what are the physio-chemical properties and how that is different from protein-sequence descriptors? Please help ...
physio-chemical properties written 6 months ago by ashamscsoft10
0
votes
2
answers
171
views
2
answers
Comment: C: Accuracy prediction for regression
... Can u explain in detail? By using cross-validation how to calculate accuracy for regression. ...
written 6 months ago by ashamscsoft10
2
votes
2
answers
171
views
2
answers
(Closed) Accuracy prediction for regression
... I have a doubt in accuracy prediction for regression. I'm new to regression, so please help me? Suppose if I have correlation coefficient as 0.97 and root mean square error as 0.0003. How to calculate accuracy for this? ...
regression written 6 months ago by ashamscsoft10 • updated 6 months ago by Nicolas Rosewick5.8k
0
votes
0
answers
223
views
0
answers
Autodock vina scores
... I have a doubt in getting scores from autodock vina. I have used --score_only to get the scores. But the output what i get is only 0.I have prepared a text file which contains center and grid points.I do not know why I'm getting values like that? Can anyone help ...
autodock vina scores written 7 months ago by ashamscsoft10
0
votes
1
answer
289
views
1
answer
Binding Affinity prediction
... I have a doubt whether ki and kd are same according to this link http://autodock.scripps.edu/faqs-help/faq/how-autodock-4-converts-binding-energy-kcal-mol-into-ki. And also according to this link there is a formula in this link like ln k(binding)=-ln K(inhibition). In this we have to prove lhs=rhs? ...
binding affintiy ki kd written 11 months ago by ashamscsoft10 • updated 11 months ago by Devon Ryan73k
0
votes
0
answers
391
views
0
answers
Binding Affinity prediction
... i have a doubt in binding affinity prediction. My doubt is im getting positive value for affinity. The formula i used to calculate is kd=[l][p]/[lp], where l is ligand molar concentration and p is protein molar concentration and [lp] is complex molar concentration. I calculated molar concentration b ...
binding affinity molar concentration written 11 months ago by ashamscsoft10
0
votes
1
answer
331
views
1
answers
Comment: C: molecular weight, protein
... automatic calculation i did in this link only. But my doubt is i dont use any solution here. without using any solution can we calculate ...
written 11 months ago by ashamscsoft10
1
vote
1
answer
331
views
1
answer
molecular weight, protein
... i have a doubt in conversion of molecular weight to molar concentration. my doubt is i did this in online and the link is molbiol.edu.ru . In this im putting my protein MW, in the calculation of molar concentration part do i need to change anything or can i press the calculate button. Since im calcu ...
molecular weight molar concentration written 11 months ago by ashamscsoft10
0
votes
0
answers
407
views
0
answers
Comment: C: Molecular weight, SPDBV tool
... I uploaded pdb file of a complex in pymol, written from autodock file. I got that file after docking. The error i face when i try to compute complex weight is CmdLoad: "F:/A/complex.pdb" loaded as "complex". Traceback (most recent call last): File "C:\Program Files\PyMOL\\PyMOL/modul ...
written 11 months ago by ashamscsoft10 • updated 10 months ago by WouterDeCoster24k

Latest awards to ashamscsoft

Popular Question 5 months ago, created a question with more than 1,000 views. For Active site Prediction
Popular Question 11 months ago, created a question with more than 1,000 views. For Converting a sequence to FASTA format in R

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1024 users visited in the last hour