User: crespialba

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crespialba10
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Posts by crespialba

<prev • 5 results • page 1 of 1 • next >
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Best tool for quality trimming at 5 prime?
... Which is the best tool to perform a quality trimming at 5 prime end? I have a sample with some sequences with low quality at the the beginning (as well as at the end) and I want to trim those parts with low quality. ...
next-gen quality-control sequencing written 5 months ago by crespialba10 • updated 4 months ago by Biostar ♦♦ 20
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Comment: C: How Does One Decide Which Bacterial Taxonomic Classification To Use: Rdp, Silva
... It is possible to map the silva entries to the standard taxonomic classification/ids used by NCBI and EBI. In the archive section, for each release there is a directory called "taxonomy". In here you can find a file that contains the name "taxmap_embl". This file tells you for each silva id the corr ...
written 2.5 years ago by crespialba10
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Answer: A: How to get phylum, class etc taxonomic ids from taxid?
... This question was answered in stackoverflow http://stackoverflow.com/questions/36503042/how-to-get-taxonomic-specific-ids-for-kingdom-phylum-class-order-family-gen ...
written 3.3 years ago by crespialba10
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How to use MetaClusterTA for binning metagenomic / metatranscriptomic data?
... I am trying to use MetaClusterTA (http://i.cs.hku.hk/~alse/MetaCluster/download.html) for binning and annotating my metatranscriptomic dataset. To start with, I do it with a simulated dataset that I created with NeSSM and alignment performed by transabyss. I followed the instructions in the MetaCl ...
binning metagenomics clustering metacluster written 3.3 years ago by crespialba10
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How to get phylum, class etc taxonomic ids from taxid?
... I have a list of taxids that looks like this: 1204725 2162 1300163 420247 I am looking to get a file with taxonomic ids in order from the taxids above: kingdom_id phylum_id class_id order_id family_id genus_id species_id I am using the ...
phylogenetics taxonomy written 3.4 years ago by crespialba10 • updated 2.7 years ago by Biostar ♦♦ 20

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Popular Question 2.2 years ago, created a question with more than 1,000 views. For How to get phylum, class etc taxonomic ids from taxid?

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