User: mks002

gravatar for mks002
mks002190
Reputation:
190
Status:
Trusted
Location:
Bangalore. India
Website:
http://www.manishkumar...
Last seen:
2 months, 2 weeks ago
Joined:
4 years, 6 months ago
Email:
m******************@gmail.com

Posts by mks002

<prev • 91 results • page 1 of 10 • next >
0
votes
2
answers
2.3k
views
2
answers
Comment: C: MAKER command maker2zff .ann and .dna files are empty
... Hi, Check the alternative which I've given in this thread. ...
written 8 months ago by mks002190
1
vote
2
answers
969
views
2
answers
Answer: C: GO enrichment analysis graphs after goseq: any easy solutions?
... Hello, Hope you find the following tools useful in your work. For making Bar Plot for publication, it can be done using [GraphPad][1] tool. For Making Enrichment Plot, u can use R package [clusterProfiler][2]. Biological Network can be done using Cyctoscape App [clueGo][3]. [1]: https://www. ...
written 10 months ago by mks002190
0
votes
1
answer
532
views
1
answers
Comment: C: Some Question About Converting sra format file to fastq format file
... I think nanopore sequencing data does not have any quality score. Fastq has a quality score. So you can get fast5 file out of SRA check the link [how-to-get-nanopore-minion-fast5-from-sra][1]. Later u can use [poretools][2] to convert fast5 to fastq. [1]: https://bioinformatics.stackexchange.com ...
written 12 months ago by mks002190
0
votes
1
answer
824
views
1
answers
Comment: C: Seeking Freelance bioinformatician
... 'manishkumarsinha002 [AT] gmail [dot] com' I would be helpful, So you can write to me. ...
written 13 months ago by mks002190
1
vote
4
answers
341
views
4
answers
Answer: C: How to find if a rsID is exomic ?
... Check the link [EVA][1] [1]: https://www.ebi.ac.uk/eva/ ...
written 14 months ago by mks002190
0
votes
0
answers
279
views
0
answers
Comment: C: Relaxed alignment using Bowtie
... Your calculation is right for 4 %. You must be knowing the default seed length ( -l ) is 28. But if give it 75, Reads of smaller length will be not be mapped (I think). Since your read chemistry is 1*75 and u must carry trimming and many of your read lengths would have become shorter due to quality ...
written 14 months ago by mks002190
0
votes
0
answers
555
views
0
answers
Comment: C: How to better find and select the appropriate data set for my research?
... You can have look at [Encode][1] . Hope this helps you out. [1]: https://www.encodeproject.org/ ...
written 15 months ago by mks002190
0
votes
1
answer
576
views
1
answers
Comment: C: Map genes to the ids
... You can try out [g:Profiler][1]. Hope this would solve your query. [1]: https://biit.cs.ut.ee/gprofiler/convert ...
written 15 months ago by mks002190
1
vote
1
answer
394
views
1
answers
Comment: C: How to find read count for a newly discovered transcript
... For mapping you can use Hisat program and then you use Depth of coverage under GATK program . By this exactly u can know about the coverage for the particular transcripts. -L option u check while running the GATK program where you can provide your interest of transcript in bed format (so for particu ...
written 16 months ago by mks002190
0
votes
3
answers
680
views
3
answers
Comment: C: What to do after differential expression
... RNA-Seq variant analysis you can perform apart from annotating the DEGs and performing enrichment analysis. ...
written 16 months ago by mks002190

Latest awards to mks002

Popular Question 6 months ago, created a question with more than 1,000 views. For Best way for rRNA prediction of Eukaryotic Genome(~500mb)
Popular Question 11 months ago, created a question with more than 1,000 views. For Methylation Analysis (Bisulfite sequencing)
Popular Question 13 months ago, created a question with more than 1,000 views. For Goat Genome gene prediction
Popular Question 16 months ago, created a question with more than 1,000 views. For Human Mitochondrial Variants Annotation
Popular Question 18 months ago, created a question with more than 1,000 views. For Human Mitochondrial Variants Annotation
Popular Question 21 months ago, created a question with more than 1,000 views. For MAKER command maker2zff .ann and .dna files are empty
Popular Question 21 months ago, created a question with more than 1,000 views. For Big Genome Assembly of Medicinal Plant
Popular Question 23 months ago, created a question with more than 1,000 views. For MAKER command maker2zff .ann and .dna files are empty

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1549 users visited in the last hour