User: Firas

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Firas0
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Posts by Firas

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Counting base and nucleotide frequency of multifasta file
... Using shell while read line; do echo $line | grep -v '>' | grep -o "[ACGT]" | sort | uniq -c; \ echo $line | grep '>' ; done < file.fasta The result: >spacer_1 2 A 3 C 6 G 4 T >spacer_2 1 A 1 C 2 ...
written 4 days ago by Firas0
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Integrative analysis of omics studies using machine learning
... Hi All, I would like to use public omics datasets (ChIP-seq, RNA-seq, and ATAC-seq) from different studies to do an integrative analysis as follow: 1. Normalise samples, within each type of omics, from different public datasets. 2. Convert the normalised values into a uniform scale to make the c ...
chip-seq atac-seq rna-seq machine learning written 5 weeks ago by Firas0
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Comment: C: Removal of repeat and blacklist regions from ChIP-seq data
... Would you mind sharing the DKFZ blacklist with me as well? Many thanks. myusername[at]ymail.com ...
written 11 weeks ago by Firas0
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Comment: C: Search for proteins with specific domain AND function
... Thank you for the links.  ...
written 2.9 years ago by Firas0
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Comment: C: Search for proteins with specific domain AND function
... Many thanks for the hint. Exactly what I want.   ...
written 2.9 years ago by Firas0
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Search for proteins with specific domain AND function
... Is there a protein database/search engine where one can search for proteins containing specific domain (e.g. SET) and have a specific function (e.g. methyltransferase)? Many thanks ...
search database protein written 2.9 years ago by Firas0 • updated 2.9 years ago by Pierre Lindenbaum115k

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Popular Question 4 weeks ago, created a question with more than 1,000 views. For Search for proteins with specific domain AND function

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