User: Christian

gravatar for Christian
Christian2.6k
Reputation:
2,580
Status:
Trusted
Location:
Vienna
Scholar ID:
Google Scholar Page
Last seen:
5 months, 2 weeks ago
Joined:
6 years, 4 months ago
Email:
f**************@gmail.com

Posts by Christian

<prev • 225 results • page 1 of 23 • next >
2
votes
2
answers
488
views
2
answers
Answer: A: CRISPR off-target effects causing unexpected mutations - good science or media h
... Wrong control (different mouse strain) and tiny sample size. Waiting for proper study here (which is overdue btw). ...
written 5 months ago by Christian2.6k
0
votes
3
answers
1.5k
views
3
answers
Comment: C: DESeq2: Find differentially expressed genes specific to one condition
... Unfortunately not. I went ahead with the set-overlap solution, although I am still not fully satisfied with it from a statistical point of view. EDIT: should have been a comment to the previous answer, not a reply to this comment. ...
written 6 months ago by Christian2.6k
0
votes
2
answers
444
views
2
answers
Answer: A: Confusion : Why and how does a nucleotide in Reference Genome is differenet from
... Most likely reference genome and RefSeq represent different alleles. Less likely but possible are sequencing errors and RNA editing. ...
written 8 months ago by Christian2.6k
0
votes
3
answers
3.3k
views
3
answers
Answer: A: Aligning paired end fastq files dumped from SRA
... The following command worked for me: cat sra.fq | perl -ne 's/\.([12]) /\/$1 /; print $_' > sra.fix.fq ...
written 9 months ago by Christian2.6k
0
votes
0
answers
455
views
0
answers
Comment: C: Variant Effect Predictor parameters for custom gff and fasta
... [CooVar][1] was developed for annotating non-standard genomes. The paper contains an in-depth comparison with VEP results. (Disclaimer: I'm co-author of this paper). [1]: http://link.springer.com/article/10.1186/1756-0500-5-615 ...
written 10 months ago by Christian2.6k
0
votes
1
answer
410
views
1
answers
Comment: C: run our pipeline on TCGA data
... The Cancer Genomics Cloud (CGC) from SevenBridges allows you to bring your own custom tools/pipeline to the TCGA data using a SDK. In addition, pilot funds from the NCI are available to cover (at least partially) for the compute cost. Direct access to user buckets is also possible via the Volumes AP ...
written 10 months ago by Christian2.6k
3
votes
0
answers
961
views
0
answers
Comment: C: Use a workflow management tool to manage your computational pipelines
... Another really good place to start: https://github.com/common-workflow-language/common-workflow-language/wiki/Existing-Workflow-systems ...
written 12 months ago by Christian2.6k
0
votes
1
answer
1.3k
views
1
answers
Comment: C: Bioinformatician/Bioinformatics Data Analyst, Vienna, Austria
... Yes, the position has not been filled yet. ...
written 13 months ago by Christian2.6k
0
votes
1
answer
1.2k
views
1
answers
Comment: C: Recommended tools for positional gene enrichment (PGE) analysis?
... I haven't looked for it, because the Perl script works well and I am still using it in my analysis pipelines (in addition to GSEA with MSigDB positional gene sets). ...
written 14 months ago by Christian2.6k
0
votes
2
answers
856
views
2
answers
Comment: C: What's the recommended graduate educational path for a fullstack developer to tr
... Check out the bioinformatics subreddit. They have a lot of carreer-related discussions and you might get some useful advice there as well. Good luck! ...
written 15 months ago by Christian2.6k

Latest awards to Christian

Appreciated 6 months ago, created a post with more than 5 votes. For A: Detecting Polyploidy Using An Assembly
Appreciated 8 months ago, created a post with more than 5 votes. For A: Detecting Polyploidy Using An Assembly
Popular Question 8 months ago, created a question with more than 1,000 views. For Bioinformatician/Bioinformatics Data Analyst, Vienna, Austria
Popular Question 8 months ago, created a question with more than 1,000 views. For Does Fasta Produce A Local Or Global Alignment?
Popular Question 8 months ago, created a question with more than 1,000 views. For Does Fasta Produce A Local Or Global Alignment?
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Renaming All Files In A Directory With A Perl Script
Popular Question 9 months ago, created a question with more than 1,000 views. For Does Fasta Produce A Local Or Global Alignment?
Appreciated 10 months ago, created a post with more than 5 votes. For A: Visualizing Pairwise Distance Between A Group Of Sequences
Commentator 12 months ago, created a comment with at least 3 up-votes. For C: How To Correctly Classify Gene Families?
Prophet 13 months ago, created a post with more than 20 followers. For Are we facing a bioinformatician shortage?
Prophet 14 months ago, created a post with more than 20 followers. For Which software do you use for RNA-seq data quality control?
Popular Question 14 months ago, created a question with more than 1,000 views. For Does Fasta Produce A Local Or Global Alignment?
Great Question 16 months ago, created a question with more than 5,000 views. For Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing Data?
Appreciated 17 months ago, created a post with more than 5 votes. For A: Visualizing Pairwise Distance Between A Group Of Sequences
Student 18 months ago, asked a question with at least 3 up-votes. For Program to prioritize silent SNVs?
Great Question 18 months ago, created a question with more than 5,000 views. For Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing Data?
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Renaming All Files In A Directory With A Perl Script
Popular Question 20 months ago, created a question with more than 1,000 views. For How To Compute A Local Multiple Protein Sequence Alignment?
Good Answer 21 months ago, created an answer that was upvoted at least 5 times. For A: Detecting Polyploidy Using An Assembly
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: Renaming All Files In A Directory With A Perl Script
Popular Question 22 months ago, created a question with more than 1,000 views. For Acceptable "Percentage Of Usable Bases On Target" In Exome Sequencing Experiment
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Renaming All Files In A Directory With A Perl Script
Popular Question 23 months ago, created a question with more than 1,000 views. For Acceptable "Percentage Of Usable Bases On Target" In Exome Sequencing Experiment
Popular Question 24 months ago, created a question with more than 1,000 views. For Acceptable "Percentage Of Usable Bases On Target" In Exome Sequencing Experiment

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1367 users visited in the last hour