User: Lisa
Lisa • 310
- Reputation:
- 310
- Status:
- Trusted
- Location:
- Ireland
- Last seen:
- an hour ago
- Joined:
- 7 years, 5 months ago
- Email:
- l*********@gmail.com
Posts by Lisa
<prev
• 23 results •
page 1 of 3 •
next >
1
vote
2
answers
291
views
2
answers
... Yeah, I am redoing it the way you have suggested now.
Sorry if I was unclear. I meant that I subsetted the data into t0.vs.t3, t1.vs.t3, and t2.vs.t3, ran feature counts on them all individually and then did the deseq2 on each subset. I see now that this was unnecessary.
Thanks for clarifying ...
written 3 months ago by
Lisa • 310
0
votes
2
answers
291
views
2
answers
... Thank you for the links to the literature, I will have a read and see what else I can use to answer my questions. At the moment, the differential gene expression seems the most appropriate choice, as the ultimate ideal goal is to potential find biomarkers indicative of “disease” and “cure”. Howev ...
written 3 months ago by
Lisa • 310
0
votes
2
answers
291
views
2
answers
... Hi Kevin,
I actually did the pairwise comparisons separately, using a featureCounts matrix of just the two time-points in each comparison. Is it better practice to do them together?
When you suggest an ANOVA between time-points do you mean for me to test the variance between the groups to test ...
written 3 months ago by
Lisa • 310
2
votes
2
answers
291
views
2
answers
... Hi,
I am looking to do a time-course analysis of my RNA-seq human, whole blood datasets.
I have 30 samples, across 4 time-points. I have no replicates.
T0 - Week 0, initial treatment
T1 - Week 2, two weeks into treatment
T2 - Week 12, twelve weeks into treatment
T3 - Week 26, end of treatment; ...
1
vote
0
answers
2.2k
views
0
answers
... Hi,
I'm having a problem which I'm having difficultly pinpointing so sorry if I'm not being too clear.
I generated simulated reads using Art at different read lengths and fold coverage. I'll include an example of the command line I used to make sure that I did that step correctly. I generat ...
written 4.6 years ago by
Lisa • 310
0
votes
2
answers
4.8k
views
2
answers
... Thanks that makes a bit more sense. It seems really simple when you say it like that, so I think I was just having temporary brain melt or something.
...
written 4.9 years ago by
Lisa • 310
8
votes
2
answers
4.8k
views
7 follow
2
answers
... Hi. I was wondering if anybody can help me figure out how to use Orthomcl to identify the core genome of E. coli genomes? I have 52 E. coli genomes that I used in orthomcl to produce ortholog groups. I followed all the steps in the user guide, until I got to the end. Now I'm left with this massi ...
0
votes
0
answers
2.6k
views
0
answers
... Deadly thanks. I shall do that. And provide as many details as I can.
...
written 4.9 years ago by
Lisa • 310
0
votes
0
answers
2.6k
views
0
answers
... Hi. Sorry for digging up an old post. I was just wondering has anybody solved this? I was wondering the same thing and wasn't sure if I should post a new question when this ones exists.
...
written 4.9 years ago by
Lisa • 310
1
vote
8
answers
5.7k
views
8
answers
... I also recently had the same problem and found that this connect string worked for me, as some of the others suggested just wouldn't work for me for some reason. :
dbConnectString=dbi:mysql:orthomcl:mysql_local_infile=1:localhost:3306
...
written 5.0 years ago by
Lisa • 310
Latest awards to Lisa
Appreciated
2.1 years ago,
created a post with more than 5 votes.
For How To Extract The Core Genes From The Orthomcl Output File?
Popular Question
2.1 years ago,
created a question with more than 1,000 views.
For Fold coverage in simulated reads not what it says it is?
Popular Question
2.1 years ago,
created a question with more than 1,000 views.
For Mrbayes Mpi Version Not Working Correctly On Server
Librarian
2.4 years ago,
created a post with more than 10 bookmarks.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Popular Question
2.8 years ago,
created a question with more than 1,000 views.
For Fold coverage in simulated reads not what it says it is?
Popular Question
3.4 years ago,
created a question with more than 1,000 views.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Epic Question
3.8 years ago,
created a question with more than 10,000 views.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Popular Question
3.9 years ago,
created a question with more than 1,000 views.
For How To Extract The Core Genes From The Orthomcl Output File?
Prophet
3.9 years ago,
created a post with more than 20 followers.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Student
4.5 years ago,
asked a question with at least 3 up-votes.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Great Question
4.6 years ago,
created a question with more than 5,000 views.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Voter
4.8 years ago,
voted more than 100 times.
Supporter
4.8 years ago,
voted at least 25 times.
Student
6.0 years ago,
asked a question with at least 3 up-votes.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Appreciated
6.0 years ago,
created a post with more than 5 votes.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Good Question
6.0 years ago,
asked a question that was upvoted at least 5 times.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Popular Question
6.0 years ago,
created a question with more than 1,000 views.
For Is Tophat The Only Mapper To Consider For Rna-Seq Data?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 2306 users visited in the last hour