Moderator: Michael Kuhn
Michael Kuhn ♦ 4.9k
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Posts by Michael Kuhn
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... these two papers will be interesting for you: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002690 http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002694
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written 4.0 years ago by
Michael Kuhn ♦ 4.9k
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... cross-posted with Bio.SE: http://biology.stackexchange.com/questions/7800/confusion-related-to-a-term-probe-by-background-interaction
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written 4.5 years ago by
Michael Kuhn ♦ 4.9k
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... http://getprismatic.com/ –– you add your interests, and get news on that topic. I've already discovered several interesting papers / blog posts that way
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written 4.6 years ago by
Michael Kuhn ♦ 4.9k
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... No solution, but a paper on this concept: Edgetic perturbation models of human inherited disorders
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written 5.2 years ago by
Michael Kuhn ♦ 4.9k
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... The NCBI ORF Finder works well to find all six possible translations.
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written 5.3 years ago by
Michael Kuhn ♦ 4.9k
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Comment:
C: Biopython Import Error
... Well... you need to install numpy: http://numpy.scipy.org/
...
written 5.3 years ago by
Michael Kuhn ♦ 4.9k
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5
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5
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... I closed this question, because BioStar's move to a self-hosted platform has put an end to the discussion. ...
written 5.4 years ago by
Michael Kuhn ♦ 4.9k
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16
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... I closed this question, because BioStar's move to a self-hosted platform has put an end to the discussion. ...
written 5.4 years ago by
Michael Kuhn ♦ 4.9k
2
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Answer:
A: Link Between Ensembl And Omim
... 𝄆 If you want to get mappings from a database like Ensembl , look at BioMart 𝄇
On the Attributes / External References you find: MIM Morbid Accession, MIM Morbid Description, MIM Gene Accession, MIM Gene Description ...
written 5.4 years ago by
Michael Kuhn ♦ 4.9k
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... CD-HIT uses heuristics to find clusters of proteins with high similarity. (The name stands for "Cluster Database at High Identity with Tolerance".) So a threshold of 30% is well outside the intended parameter range. At such a low identity threshold the heuristic will miss many pairs that have >30 ...
written 5.4 years ago by
Michael Kuhn ♦ 4.9k
Latest awards to Michael Kuhn
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For A: Extract The Abstract Of Interpro Entries
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For A: On Retrieving Protein-Protein Interactions From String-Db
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For A: Classsify Species Into Groups
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For How To Predict Conserved Phosphorylation Sites From Multiple Alignment
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For Tools For Visualizing Overlap Between Go Terms
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For C: Should Biostar Be Switched Over To The Stackexchange Network?
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For A: Calculating The Performance Of A Tool
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For A: What Is The Best Way To Map All Genes Of A Microorganism To Go Terms
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For C: Should We Accept The Terms For The Migration To Stackexchange 2.0
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For C: Should We Accept The Terms For The Migration To Stackexchange 2.0
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For How To Predict Conserved Phosphorylation Sites From Multiple Alignment
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For C: Biopython Import Error
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For Estimating Size Of Protein Families During Evolution
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For A: Where To Access Protein Quaternary Structure (Pqs) Data
Teacher
5.5 years ago,
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For A: On Retrieving Protein-Protein Interactions From String-Db
Teacher
5.5 years ago,
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For A: Extract The Abstract Of Interpro Entries
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5.6 years ago,
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For A: How To Measure Gene Enrichement (Go, Kegg) Using R And Ensembl Ids ?
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5.7 years ago,
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For A: Identifying Multiple Domains Using Hmmer 3.0
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