User: Ekalavya

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Ekalavya0
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Posts by Ekalavya

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length of Long interspersed nuclear element in the mouse genome
... rmsk primary table has > 5 million records for repetitive elements. There were 989434 entries belong to "LINE" class of repeat. When I checked the lengths of these LINEs, a majority of them (973906) were shorter than 5kb. I took the "genoStart" and "genoEnd" to calculate the lengths. Aren't these ...
genome long interspersed nuclear element written 10 weeks ago by Ekalavya0 • updated 13 days ago by Biostar ♦♦ 20
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Answer: A: Bowtie2 Output, Concordant Vs. Discordant Mapping??
... A discordant alignment is an alignment where both mates align uniquely, but that does not satisfy the paired-end constraints (`--fr`/`--rf`/`--ff`, `-I`, `-X`). `--fr`/`--rf`/`--ff`: The upstream/downstream mate orientations for a valid paired-end alignment against the forward reference strand. ...
written 3.3 years ago by Ekalavya0

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