User: soza

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soza10
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3 years, 12 months ago
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4 years, 8 months ago
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Posts by soza

<prev • 9 results • page 1 of 1 • next >
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Comment: C: How To Find The Pathways In Which A Given Gene Or Protein Is Involved?
... Hey ff.cc.cc What signature files are you talking about? I want to use your methodology of identification, could you tell me what archives did you use? thanks ...
written 4.0 years ago by soza10
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What is the Non Redundant NCBI database NAME?
... Hey guys, I want to run a remote blast on non-redundant database from NCBI but I dont know the name, does anyone here know what is? example: blastn -db **rRNA_typestrains/prokaryotic_16S_ribosomal**_RNA -query inputfile.fasta -out outputfile.xml -remote -max_target_seqs 3 -outfmt 5 blastn -db (* ...
ncbi blast written 4.0 years ago by soza10 • updated 4.0 years ago by Farbod3.3k
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Comment: C: Extracting protein sequence with Matlab
... Thanks, I discovered a way to do that ...
written 4.4 years ago by soza10
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Extracting protein sequence with Matlab
... Hello guys, anyone know how to extract the sequence of a protein in a pdb for create a variable with Matlab? ...
matlab written 4.4 years ago by soza10
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Non redundant genera database
... Hello ladies and gentlemen Can you guys help me? I want to create a database of non redundant sequences of a bacteria genera, how can I do this? I was trying to download the NR database from NCBI but it's so large,I just want a genera, do you guys know how to do it or know someone who might know? ...
database blast written 4.4 years ago by soza10
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How to run TBLASTn local
... Hey guys What commands should i do to run a tblastn local? I want to know the query coverage too. thank you for your time ...
tblastn blast written 4.7 years ago by soza10 • updated 4.7 years ago by genomax91k
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Comment: C: What is the best and fast way to acess query coverage from tBLASTn Local on wind
... do you know what outfmt can provide this info? there is a lot of options ...
written 4.7 years ago by soza10
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What is the best and fast way to acess query coverage from tBLASTn Local on windows?
... I was using the UGENE but it cant provide the query coverage yet. Do you guys know another tool that can provide this info? thanks! ...
alignment tool blast written 4.7 years ago by soza10 • updated 4.7 years ago by Istvan Albert ♦♦ 85k
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Comment: C: How to know the query coverage
... Hello Pierre, do you know a easy and fast way to acess query coverage from tBLASTn? thanks! ...
written 4.7 years ago by soza10

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