User: kartikayprasad

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Posts by kartikayprasad

<prev • 8 results • page 1 of 1 • next >
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SNP effect on protein stability
... Hello, i am doing an exercise in which i have to find the effect of the SNP`s on the protein stability. i have the sequenced genome and i know the position of the SNPs. is there any tool in which i just give the position of the snp and the changed nucleotide and it will tell me whether it is affec ...
next-gen rna-seq snp stability of protein written 21 months ago by kartikayprasad0 • updated 21 months ago by Pol60
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(Closed) how to design biological pathways
... Hello friends, i am new in this field, can anyone please help me in designing biological pathway. how to design biological pathways? what are the steps for designing pathways? any paper or something which tell me details about designing pathways. thanks in advance ...
pathway designing biological written 22 months ago by kartikayprasad0 • updated 22 months ago by natasha.sernova2.8k
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how to find splice variants using trinity
... Hi friends, i want to find the splice variants using trinity. but i never use trinity, so can anyone please help me how to find splice variants using trinity. any paper or manual in which they describe ho to find the splice variants using trinity. thanks in advance ...
genome trinity next-gen rna-seq sequencing written 22 months ago by kartikayprasad0 • updated 21 months ago by Biostar ♦♦ 20
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Calculation of genic and intergenic region
... Hellow, I am using CLC for assembling genome. can anyone here please tell me how to find the percentage of genic and intergenic regions in the genome. P.S :- I already have some annotations transferred on my genome. ...
gene genome next-gen rna-seq written 22 months ago by kartikayprasad0
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rna seq analysis
... I am a master student . i am doing my project in my university. I am using clc to analyse the genome to find the novel genes and splice variants. i have genome on which annotations are transferred.  i have to find those regions which are excluding those anotation regions. Is there any script or a ...
next-gen reference genome rna-seq written 23 months ago by kartikayprasad0 • updated 23 months ago by andrew.j.skelton734.2k
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Help in Trinity
... hellow , i am a masters student. I am doing de novo analysis of RNA-SEQ data, for its analysis i have to use TRINITY for finding novel transcripts. I am totally new for trinity. can anyone please help me how to use trinity and any easy way of using it.   Thanks in advance ...
trinity next-gen rna-seq written 23 months ago by kartikayprasad0 • updated 23 months ago by geek_y8.1k
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Comment: C: denovo analysis of rna seq data
... right now i am using CLC . And i am totally new in this.   ...
written 23 months ago by kartikayprasad0
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denovo analysis of rna seq data
... Hi all, I am a master student with biology background. I recently inherit a RNA Seq analysis project from a PhD student in my lab. We already have paired-ended RNA Seq data generated from illumina HiSeq and mapped that sequence using de novo assembly. Now i get contigs but i am now get stuck(i don` ...
next-gen rna-seq written 23 months ago by kartikayprasad0 • updated 23 months ago by Biogeek260

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