User: bioinfouser

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bioinfouser70
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Posts by bioinfouser

<prev • 46 results • page 1 of 5 • next >
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Comment: C: Simple explanation and usage of WGCNA package?
... Sorry, I meant to say your Biostar answers! But thanks for the tip for searching your answers! I will do it like that in future! ...
written 5 months ago by bioinfouser70
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Comment: C: Simple explanation and usage of WGCNA package?
... @Kevin: Also, I wish there was a separate webpage where one can find all your detailed bioconductor answers! They are soooo valuable for newbies like myself! ...
written 5 months ago by bioinfouser70
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Comment: C: Simple explanation and usage of WGCNA package?
... Thank you very much, Kevin! ...
written 5 months ago by bioinfouser70
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Comment: C: Simple explanation and usage of WGCNA package?
... Thank you very much, Arup! ...
written 5 months ago by bioinfouser70
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Simple explanation and usage of WGCNA package?
... Dear valued community members, I am a novice biological science phd student started to delve into doing analysis independently. I came upon `WGCNA` package and would like to apply it to my data. Now, I have read about it in the tutorials and it is explained in great details there from Steve Horvath ...
wgcna chip-seq rna-seq written 5 months ago by bioinfouser70
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Comment: C: Difference of DiffBind library size normalisation vs DESeq2 library size normali
... Dear Rory, one more question. this default library size normalisation in `DiffBind` is done of the raw counts, or? ...
written 6 months ago by bioinfouser70
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Comment: C: Recommendation for packages for cell type deconvolution from bulk RNAseq data?
... Thanks a lot! I am looking for recommendation specifically for brain tissue RNAseq. I will check more extensively then. ...
written 6 months ago by bioinfouser70
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Comment: C: Recommendation for using limma-voom workflow for ChIPseq analysis. Or other tool
... Thank you! I will look into it. My current knowledge tells me, it is a window based tool, rather then "analysing predefined peaks(by macs2, for example)" that I am doing. Could you comment if csaw is more advantageous than defined peak based analysis? ...
written 6 months ago by bioinfouser70
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Recommendation for packages for cell type deconvolution from bulk RNAseq data?
... I was wondering, if you have some recommendation on which R package to use for doing cell-type deconvolution from bulk RNAseq data? I would really appreciate your suggestions! [edit] I am looking for recommendation specifically for brain tissue RNAseq. Any package that you have used in that contex ...
deconvolution rna-seq cell type written 6 months ago by bioinfouser70 • updated 3 months ago by xinyiy0270
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Recommendation for using limma-voom workflow for ChIPseq analysis. Or other tool for capturing global histone mark difference?
... Hello awesome community! I just wanted to know your expert opinion, whether `limma-voom` protocol is suitable for analysing ChIPseq data(with `macs2` peaks and raw read counts generated from `featureCounts`). Does it assume that majority of the expression will not change among groups, just like `DE ...
chip-seq written 6 months ago by bioinfouser70

Latest awards to bioinfouser

Popular Question 7 months ago, created a question with more than 1,000 views. For mm10 enhancer annotation for ngs.plot.r
Supporter 14 months ago, voted at least 25 times.
Popular Question 19 months ago, created a question with more than 1,000 views. For mm10 enhancer annotation for ngs.plot.r
Popular Question 2.2 years ago, created a question with more than 1,000 views. For mm10 enhancer annotation for ngs.plot.r

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