User: f.fassihian

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f.fassihian20
Reputation:
20
Status:
New User
Location:
Germany
Last seen:
3 years, 3 months ago
Joined:
3 years, 6 months ago
Email:
f**********@googlemail.com

Posts by f.fassihian

<prev • 3 results • page 1 of 1 • next >
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How to convert a gff3 to gtf?
... Hi all, I got a gff3 hsa miRNA annotation file from mirBase. I need to convert it to gtf . I tried to do that with cufflinks-2.2.1 on Linux using gffread : gffread my.gff3 -T -o my.gtf But my output file is empty! Does anyone have any suggestion how it can be otherwise converted? Any other tools? ...
gtf gff3 gff written 3.3 years ago by f.fassihian20 • updated 3.0 years ago by Daniel Standage3.9k
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Answer: A: Estimating the distribution of small non-coding RNAs among the reads: Which anno
... Thanks a lot for your tips! I'm going to use RFAM. ...
written 3.4 years ago by f.fassihian20
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Estimating the distribution of small non-coding RNAs among the reads: Which annotation database / r-Package?
... Hi everybody, I am working on miRNAs derived from plasma exosomes. I have already mapped my small RNA sequences against human genome and mature miRNAs from mirBase to get the known miRNAs. Now, I would like to annotate the reads that could not be identified as miRNAs to find the distribution of oth ...
annotation small non-coding rna r-package mirna written 3.5 years ago by f.fassihian20

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