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Posts by f.fassihian
... Hi all, I got a gff3 hsa miRNA annotation file from mirBase. I need to convert it to gtf . I tried to do that with cufflinks-2.2.1 on Linux using gffread : gffread my.gff3 -T -o my.gtf But my output file is empty! Does anyone have any suggestion how it can be otherwise converted? Any other tools? ...
... Thanks a lot for your tips! I'm going to use RFAM. ...
Estimating the distribution of small non-coding RNAs among the reads: Which annotation database / r-Package?
... Hi everybody, I am working on miRNAs derived from plasma exosomes. I have already mapped my small RNA sequences against human genome and mature miRNAs from mirBase to get the known miRNAs. Now, I would like to annotate the reads that could not be identified as miRNAs to find the distribution of oth ...
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