User: wangdp123

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wangdp12320
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Posts by wangdp123

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Interproscan get stuck in "90% completed"
... Yes. pep.fa is a single multifasta file. I have tried to choose a smaller set of 5000 proteins to test the program but it come up with the same issue. There is NO any final result (such as tsv, gff and so on) generated till this step (90% completed) and there are something in the "temporary" directo ...
written 1 day ago by wangdp12320
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Comment: C: Interproscan get stuck in "90% completed"
... Hi, Please have a look at the following log file when interproscan is running. The version of Interproscan is 5.23-62.0 and the Linux version is CentOS release 6.6 (Final). I used qstat to submit the job shell file and provided 16 cores for this job and I utilized the default interproscan.propertie ...
written 2 days ago by wangdp12320
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Interproscan get stuck in "90% completed"
... Hi, Whenever using interproscan on about 10000 protein sequences, it will get stuck in "90% completed". Could you please help me out about this? Many thanks, Regards, Tom ...
interproscan protein annotation written 2 days ago by wangdp12320
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kissplice on TWAS analysis
... Hi, I am very happy to try the software on http://kissplice.prabi.fr/TWAS/ that is used to identify the SNPs from de-novo RNA-Seq data. The issue is that I have a large number of fastq files and I would like to feed them all into the kissplice but I am not sure if it is OK for kissplice to run su ...
next-gen rna-seq snp kissplice written 4 weeks ago by wangdp12320 • updated 27 days ago by leandro.ishi.lima20
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Tool: hppRNA: a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of numerous samples
... Hi there, I am delighted to announce the release of a new comprehensive pipeline for RNA-Seq analysis on local server - hppRNA. This tool integrates six workflows such as Tophat–Cufflink–Cuffdiff, Subread–featureCounts–DESeq2, STAR–RSEM–EBSeq, Bowtie–eXpress–edgeR, kallisto–sleuth, and HISAT–Strin ...
tool genome snp R rna-seq sequence written 3 months ago by wangdp12320
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Tool: KGCAK: A K-mer based database for genome-wide phylogeny and complexity evaluation
... I would like to present a database called KGCAK, which is constructed for investigating the phylogenetic relationships among species and the genome complexity from ~8,000 genomes that include genome sequences of diverse life forms (viruses, prokaryotes, protists, animals, and plants) and cellular or ...
genome gene tool written 14 months ago by wangdp12320
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Tool: Tools and databases for gene co-linearity and conserved pairs and clusters in a large scale of genomes
... I would like to introduce a suite of tools that are dedicated to the detection and visualization of conserved gene pairs and gene clusters, which can be used to study the co-linear phenomenon in the gene unit in a wide range of applications for your genome relevant studies. DLGP: http://lcgbase.big ...
genome tool written 14 months ago by wangdp12320

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