User: 2nelly

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2nelly180
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Geneva,Switzerland
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Posts by 2nelly

<prev • 126 results • page 1 of 13 • next >
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Comment: A: Chip-seeker heatmap around the peak centers
... hi Jingyue, In your example you plot the profile of ChIP peaks binding to TSS region (distance of peaks from TSS). What is exactly the other plot, you are talking about? Using the center of the peak as reference and plot the signal of bam or bigwig file? p.s. sorry editors, I accidentally ...
written 7 months ago by 2nelly180
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Comment: C: finding specific SNPs in VCF files
... that s fine, you can use it as it is ...
written 7 months ago by 2nelly180
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Answer: A: Find similar values in two gene lists
... You can try this awk 'NR==FNR {end[$1]; next} ($1 in end)' list1 list2 In case you want to match different columns change the first $1 with the number of column you want to compare or the second $1 to match with another column ...
written 7 months ago by 2nelly180
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Answer: A: finding specific SNPs in VCF files
... Hi Wilber0x, To make a long story short (please correct me if I am wrong) you have: 1) a vcf file from hybrids 2) a list of SNPs from an organism A ( what kind of format?) You can annotate your vcf file using tools like: http://snpeff.sourceforge.net/SnpSift.html#annotate java -jar SnpSi ...
written 7 months ago by 2nelly180
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Comment: C: Error of featureCounts : /lib64/libc.so.6: version `GLIBC_2.14' not found (requ
... find command is not a bioinformatics tool Of course if he has admin rights there is no need to use it. Precompiled binaries for the tool is a temporary solution applied to this tool. For sure in the future he will have to deal with the same error for other tools that use these libraries. So, for ...
written 8 months ago by 2nelly180
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Comment: C: Error of featureCounts : /lib64/libc.so.6: version `GLIBC_2.14' not found (requ
... we have no idea in what kind of pc or server scheme4193 works? Maybe he is working on his personal computer or in a server that he has admin rights or even know the sudo pass ...
written 8 months ago by 2nelly180
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Answer: A: Error of featureCounts : /lib64/libc.so.6: version `GLIBC_2.14' not found (requ
... I suppose if you type the following you will see older versions of GLIBC than 2.14 strings /lib64/libc.so.6 | grep GLIBC Probably ldd --version reads another version in another path. So, if you type the above you can locate other paths for libc.so.6 sudo find / -name libc.so.6 Then re ...
written 8 months ago by 2nelly180
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Comment: C: how to merge multi-chromosomes for sacCer3 -- a kind of yeast
... I ve never experienced this infinite loop for cat, but I suppose you can avoid this by using an alternative extension like: cat *.fa > merged.fasta ...
written 8 months ago by 2nelly180
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Comment: C: issue in the vcf format using Mutect2
... Sorry, for the delay I think these kind of bugs have been reported in 4.1 version. Try to use an older one like 4.0.11 or 4.0.12 ...
written 8 months ago by 2nelly180
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Comment: C: Genome coverage within specified regions
... https://bedtools.readthedocs.io/en/latest/content/tools/coverage.html bedtools coverage [OPTIONS] -a -b ...
written 8 months ago by 2nelly180

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