User: statfa

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statfa500
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5 months, 3 weeks ago
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3 years, 7 months ago
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MSc in biostatistics, interested in bioinformatics and statistical genetics

Posts by statfa

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minimum system requirement for gwas
... Hi, For a gwas on 3000 individuals, what is the computer requirement? We would like to prepare a computer for analysis and use it as server where data are kept and everyone can connect to it from everywhere to conduct the analysis. This way, The analysis is done on this computer but from a long di ...
server set up system gwas written 5 months ago by statfa500 • updated 5 months ago by jared.andrews073.4k
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Comment: C: Why are lowly expressed genes less likely to detect as DE?
... I found the reference [here][1]. Thank you [1]: https://www.ncbi.nlm.nih.gov/pubmed/23793751 ...
written 6 months ago by statfa500
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Comment: C: Why are lowly expressed genes less likely to detect as DE?
... Thank you. Do you have any reference for this, please? ...
written 6 months ago by statfa500
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Why are lowly expressed genes less likely to detect as DE?
... Hi, In my study, I have realized that the model I use is not able to detect DE genes if genes are lowly expressed. What can be th reason that lowly expressed genes are less likely to be detected as DE even if they are truely DE? I am not talking about increasing the power of analysis by removing l ...
de rna-seq written 6 months ago by statfa500 • updated 6 months ago by Devon Ryan92k
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Comment: C: RNA-Seq time series analysis using ImpulseDE2 software
... Yes it seems that impulsede2 can handle missing data. According to its manual: "matCountData in runImpulsede2(): includes read count data, **unobserved entries are NA**." But I have a question for you. How have you normalized your data? As I know, this model does not implement any normalization me ...
written 8 months ago by statfa500
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Comment: C: Looking for help and comments for my preprint paper
... Thank you a great deal. I am happy to hear it. Your comments will be very helpful. ...
written 11 months ago by statfa500
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Comment: C: Looking for help and comments for my preprint paper
... Thank you a lot for your great comments. That is so kind of you. 1- Yes, That is a good idea. I can use the common DEGs in at least two tools. I can also conduct more analysis using this idea. 2- Oh, yeah. I hadn't considered that. I agree with you. My figures look more like a table rather than a fi ...
written 11 months ago by statfa500
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Comment: C: Posting a preprint paper on biostars.com
... Thank you so much. Yes I understand what you mean and I agree with you. I posted here :https://www.biostars.org/p/346089/ ...
written 11 months ago by statfa500
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Comment: C: Posting a preprint paper on biostars.com
... Thank you so much. Would you please take a look at my post? https://www.biostars.org/p/346089/ ...
written 11 months ago by statfa500
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Comment: C: Posting a preprint paper on biostars.com
... Thank you so much. You have helped me a lot on biostars and you were the one who taught me about preprint servers. I thank you for that. Would you mind looking at my post, please? https://www.biostars.org/p/346089/ ...
written 11 months ago by statfa500

Latest awards to statfa

Student 6 months ago, asked a question with at least 3 up-votes. For Alignment and mapping
Popular Question 7 months ago, created a question with more than 1,000 views. For NGS data analysis
Popular Question 7 months ago, created a question with more than 1,000 views. For How to change depth of sequence in RNA-seq fastq files
Popular Question 7 months ago, created a question with more than 1,000 views. For NGS data analysis
Great Question 11 months ago, created a question with more than 5,000 views. For Alignment and mapping
Great Question 11 months ago, created a question with more than 5,000 views. For how to view. Rdata files in R
Popular Question 11 months ago, created a question with more than 1,000 views. For NGS data analysis
Popular Question 11 months ago, created a question with more than 1,000 views. For How to change depth of sequence in RNA-seq fastq files
Popular Question 11 months ago, created a question with more than 1,000 views. For Alignment and mapping
Popular Question 12 months ago, created a question with more than 1,000 views. For Basic SAMtools tutorial
Popular Question 14 months ago, created a question with more than 1,000 views. For Basic SAMtools tutorial
Popular Question 14 months ago, created a question with more than 1,000 views. For NGS data analysis
Popular Question 14 months ago, created a question with more than 1,000 views. For statistical analysis of WES
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Popular Question 14 months ago, created a question with more than 1,000 views. For Basic SAMtools tutorial
Popular Question 17 months ago, created a question with more than 1,000 views. For Basic SAMtools tutorial
Popular Question 17 months ago, created a question with more than 1,000 views. For NGS data analysis
Popular Question 17 months ago, created a question with more than 1,000 views. For statistical analysis of WES
Popular Question 20 months ago, created a question with more than 1,000 views. For Basic SAMtools tutorial
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