User: Lalit

gravatar for Lalit
Lalit10
Reputation:
10
Status:
New User
Location:
Jodhpur
Last seen:
3 months ago
Joined:
2 years, 5 months ago
Email:
k*********@gmail.com

Posts by Lalit

<prev • 7 results • page 1 of 1 • next >
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DESeq2 time series data and age and gender correction
... I have a dataset where I want to see effect of a drug on my patients who responded and not responded towards treatment. I collected their blood at three different time point or visit. For each patient I have their age and sex information with me. Now to perform differential expression analysis I use ...
R time series deseq2 rna-seq written 5 months ago by Lalit10 • updated 5 months ago by Kevin Blighe26k
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Comment: C: how to control age and gender effect in expression data using DESeq2
... Dear Swbarnes2, Thank you so much for the reply. Actually its just a small data set which i presented in this forum. I have 10 non responder patient and 9 responder patient. I collected their blood at three different time point or visit. So in total I have total 57 samples for three visit. I did PCA ...
written 5 months ago by Lalit10
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Answer: A: how to control age and gender effect in expression data using DESeq2
... Dear Swbarnes2, Thank you so much for the reply. Actually its just a small data set which i presented in this forum. I have 10 non responder patient and 9 responder patient. I collected their blood at three different time point or visit. So in total I have total 57 samples for three visit. I did PCA ...
written 5 months ago by Lalit10
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how to control age and gender effect in expression data using DESeq2
... I have a dataset where I want to see effect of a drug on my patients who responded and not responded towards treatment. I collected their blood at three different time point or visit. For each patient I have their age and sex information with me. Now to perform differential expression analysis I use ...
deseq2 rna-seq diffenrential expression analysis written 5 months ago by Lalit10
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WGCNA on Small RNA-Seq data
... Hello, I am interested to use WGCNA on small RNA seq data. I wondered what should be my input file? Should I use count files or differential expression file as input? If some one has used WGCNA on small RNA-Seq data then please let me know. Best, Lalit ...
small rna-seq gene expression network analysis written 23 months ago by Lalit10 • updated 23 months ago by geek_y8.7k
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Answer: A: Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
... Hii You can try Olego for splice aligner and Quantas fro isoform prediction. Here is the link http://zhanglab.c2b2.columbia.edu/index.php/Quantas_Documentation ...
written 2.3 years ago by Lalit10
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Alternative splicing by Quantas
... Hii, I am using Quantas method to identify splice variant in my data. I have single end RNA seq data on mouse brain. I am facing a problem regarding quantas command. To be more specific I used this command **perl** /home/kauranil/NGS_analysis/Quantas_files/Quantas/**countit/summarize_splicing_wrappe ...
rna-seq alternative splicing written 2.4 years ago by Lalit10

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