User: alessandrotestori7

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Posts by alessandrotestori7

<prev • 76 results • page 1 of 8 • next >
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Comment: C: cell type specific enhancers
... FOCS seems to be a good resource - thank you! ...
written 3 months ago by alessandrotestori7390
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Comment: C: cell type specific enhancers
... Sounds like a good strategy, thank you! BTW, I am working with human dendritic cells ...
written 3 months ago by alessandrotestori7390
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local ancestry in admixed populations
... Hi! Several tools are available for the estimation of local ancestry in admixed populations. However - as far as I know - these tools do not yield the local structural features (e.g.: haplotype patterns) that determine the attribution of a genomic region to a particular ancestral population. Is th ...
gwas admixture written 3 months ago by alessandrotestori7390 • updated 9 weeks ago by brunobsouzaa210
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Comment: C: cell type specific enhancers
... The coordinates are from ATAC-seq... I was hoping there would be the possibility to filter those regions for active enhancers and then identify target genes through public cell type specific data ...
written 3 months ago by alessandrotestori7390
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cell type specific enhancers
... Hi! What resources are available to predict putative target genes of a set of enhancer regions in a cell type specific manner from public data? My only input is a file with genomic regions that I want to explore. Thanks! Edit: The coordinates are from ATAC-seq... I was hoping there would be the p ...
enhancers written 3 months ago by alessandrotestori7390 • updated 3 months ago by ATpoint36k
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Comment: C: Phasing with SHAPEIT
... Have you tried to flip the SNPs that are discordant between your data and your reference (e.g.: --flip function in PLINK) and see if fewer SNPs are excluded? ...
written 7 months ago by alessandrotestori7390
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Answer: C: GWAS - QC & Tutorials.
... One good protocol for QC is: PMID: 21085122 - Data quality control in genetic case-control association studies. ...
written 9 months ago by alessandrotestori7390 • updated 8 months ago by zx87549.4k
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Comment: C: Odds ratio confidence interval in meta-analysis
... Yes, they are. Plink v1.90b3.31 ...
written 18 months ago by alessandrotestori7390
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Comment: C: install Bioconductor package and its dependencies
... Thanks a lot! This solved my problem! ...
written 2.3 years ago by alessandrotestori7390
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Comment: C: install Bioconductor package and its dependencies
... I am installing this package from R: biocLite("motifbreakR") It seems there is a problem with "libcurl": "Package libcurl was not found in the pkg-config search path. Perhaps you should add the directory containing `libcurl.pc' to the PKG_CONFIG_PATH environment variable". Then configurations ...
written 2.3 years ago by alessandrotestori7390 • updated 2.3 years ago by WouterDeCoster44k

Latest awards to alessandrotestori7

Popular Question 5 weeks ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 5 weeks ago, created a question with more than 1,000 views. For install Bioconductor package and its dependencies
Popular Question 5 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 6 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 6 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 7 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Appreciated 8 months ago, created a post with more than 5 votes. For C: GWAS - QC & Tutorials.
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Question about ensembl script
Popular Question 12 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 14 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 14 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 17 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 17 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 24 months ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 2.0 years ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 2.3 years ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 2.5 years ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Popular Question 2.5 years ago, created a question with more than 1,000 views. For beta coefficient for METAL input
Scholar 2.6 years ago, created an answer that has been accepted. For A: Question about ensembl script
Popular Question 2.9 years ago, created a question with more than 1,000 views. For getting germline mutations
Supporter 3.5 years ago, voted at least 25 times.
Scholar 4.4 years ago, created an answer that has been accepted. For A: Question about ensembl script
Teacher 4.4 years ago, created an answer with at least 3 up-votes. For A: Question about ensembl script

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