User: alessandrotestori7
alessandrotestori7 • 390
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Posts by alessandrotestori7
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Comment:
C: cell type specific enhancers
... FOCS seems to be a good resource - thank you! ...
written 3 months ago by
alessandrotestori7 • 390
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Comment:
C: cell type specific enhancers
... Sounds like a good strategy, thank you! BTW, I am working with human dendritic cells ...
written 3 months ago by
alessandrotestori7 • 390
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148
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... Hi!
Several tools are available for the estimation of local ancestry in admixed populations. However - as far as I know - these tools do not yield the local structural features (e.g.: haplotype patterns) that determine the attribution of a genomic region to a particular ancestral population. Is th ...
written 3 months ago by
alessandrotestori7 • 390
• updated
9 weeks ago by
brunobsouzaa • 210
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Comment:
C: cell type specific enhancers
... The coordinates are from ATAC-seq... I was hoping there would be the possibility to filter those regions for active enhancers and then identify target genes through public cell type specific data ...
written 3 months ago by
alessandrotestori7 • 390
2
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... Hi!
What resources are available to predict putative target genes of a set of enhancer regions in a cell type specific manner from public data? My only input is a file with genomic regions that I want to explore.
Thanks!
Edit: The coordinates are from ATAC-seq... I was hoping there would be the p ...
written 3 months ago by
alessandrotestori7 • 390
• updated
3 months ago by
ATpoint ♦ 36k
1
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1
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780
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Comment:
C: Phasing with SHAPEIT
... Have you tried to flip the SNPs that are discordant between your data and your reference (e.g.: --flip function in PLINK) and see if fewer SNPs are excluded? ...
written 7 months ago by
alessandrotestori7 • 390
5
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504
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Answer:
C: GWAS - QC & Tutorials.
... One good protocol for QC is: PMID: 21085122
- Data quality control in genetic case-control association studies. ...
written 9 months ago by
alessandrotestori7 • 390
• updated
8 months ago by
zx8754 ♦ 9.4k
0
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0
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973
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0
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... Yes, they are. Plink v1.90b3.31 ...
written 18 months ago by
alessandrotestori7 • 390
0
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1
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2.0k
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1
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... Thanks a lot! This solved my problem! ...
written 2.3 years ago by
alessandrotestori7 • 390
0
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1
answer
2.0k
views
1
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... I am installing this package from R:
biocLite("motifbreakR")
It seems there is a problem with "libcurl": "Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc' to the PKG_CONFIG_PATH environment variable".
Then configurations ...
written 2.3 years ago by
alessandrotestori7 • 390
• updated
2.3 years ago by
WouterDeCoster ♦ 44k
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