Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: archana.bioinfo87

gravatar for archana.bioinfo87
Reputation:
100
Status:
Trusted
Location:
Last seen:
3 days, 18 hours ago
Joined:
3 years ago
Email:
a****************@gmail.com

Posts by archana.bioinfo87

<prev • 55 results • page 1 of 6 • next >
0
votes
1
answer
94
views
1
answers
Comment: C: How to convert paired end data to single end?
... Thanks any other tool as well. ...
written 19 days ago by archana.bioinfo87 • 100
1
vote
1
answer
94
views
1
answer
How to convert paired end data to single end?
... Hi, Can anyone help me out to find a tool or software to convert paired-end data to single-end. I have more than 10k paired end data. Thanks ...
rna-seq written 19 days ago by archana.bioinfo87 • 100 • updated 19 days ago by genomax ♦ 63k
0
votes
0
answers
105
views
0
answers
Comment: C: CIRCexplorer2 for paired end data
... Thanks for the reply. I got the answer that a. You could offer multiple fastq files (or compressed files) separated or comma. b. Only single-read RNA-seq is supported. It is recommended to convert paired-end RNA-seq to single-read RNA-seq before alignment ...
written 4 weeks ago by archana.bioinfo87 • 100
0
votes
0
answers
105
views
0
answers
Comment: C: CIRCexplorer2 for paired end data
... CIRCexplorer2 align -G /mnt/c/Users/ark446/share/hg19_kg.gtf -i /home/archana87/bow_tie_build_hg19/hg19 -j /home/archana87/bowtie2_index/hg19 -f Sample.fastq > CIRCexplorer2_align.log I am wondering for paired-end data. Maybe it is a silly question but I am confused. ...
written 4 weeks ago by archana.bioinfo87 • 100 • updated 4 weeks ago by RamRS ♦ 20k
0
votes
0
answers
105
views
0
answers
CIRCexplorer2 for paired end data
... Hi, As I am trying to use `CIRCexplorer2` but little bit confuse that what command is perfect for my paired-end data. If anyone has some hint please let me know. Any help is much appreciated. Thanks ...
tool rna-seq written 4 weeks ago by archana.bioinfo87 • 100 • updated 4 weeks ago by ATpoint ♦ 14k
0
votes
1
answer
231
views
1
answers
Comment: C: In TCGA: R1 and R2 files are missing in fastq.gz
... Yes, thanks for this hint. I solved my problem. ...
written 5 months ago by archana.bioinfo87 • 100
0
votes
1
answer
231
views
1
answers
Comment: C: In TCGA: R1 and R2 files are missing in fastq.gz
... I downloaded from this link https://portal.gdc.cancer.gov/legacy-archive/search/f As, I have access for controlled data sets. ...
written 5 months ago by archana.bioinfo87 • 100
0
votes
1
answer
231
views
1
answer
In TCGA: R1 and R2 files are missing in fastq.gz
... Hi, I downloaded some RNA-seq data from TCGA. After doing untar I realized the R1 and R2 fastq files are not there. For example UNCID_2210756.2c113ebf-70de-4752-81de-a873f4f3db64.110324_UNC6-RDR300211_00088_FC_7090HAAXX_4.tar To untar this I used command "tar -xvf UNCI*.tar" And got a single fas ...
assembly next-gen rna-seq written 5 months ago by archana.bioinfo87 • 100
0
votes
2
answers
220
views
2
answers
Comment: C: what next after DEGs?
... Its all depend on your work objectives because you can do "n" number of analysis in research. ...
written 5 months ago by archana.bioinfo87 • 100
1
vote
1
answer
233
views
1
answers
Comment: C: sequence alignment of protein sequence
... Use standalone blast where you can make 1890 protein as a database (using makeblastdb) and rest 3 protein as a query. ...
written 5 months ago by archana.bioinfo87 • 100

Latest awards to archana.bioinfo87

Popular Question 21 months ago, created a question with more than 1,000 views. For NCBI error report
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2072 users visited in the last hour