User: archana.bioinfo87
archana.bioinfo87 • 160
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Posts by archana.bioinfo87
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... Hi,
I am trying to find a way to calculate the essentiality score for circular RNA. What method I should use to calculate the score.
Any help or suggestion is much appreciated. ...
written 4 days ago by
archana.bioinfo87 • 160
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... you can do one more thing sort the data with respect to gene_id and
for next in $(cut –d" “ -f1 sorted_data.csv | sort -u); do grep -w -m 3 "$next" sorted_data.csv ; done
You can also modify the command according to your file columns. ...
written 14 days ago by
archana.bioinfo87 • 160
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... Yes I agree @genomax because I faced same issue when I was trying to submit my batch script on server. In my case I used 31 GB for human genome. ...
written 14 days ago by
archana.bioinfo87 • 160
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Answer:
C: new file with line in common
... You can try this where one will contain list of ids only and other file having all data including ids
grep -Fwf List_of_ids all_data
...
written 14 days ago by
archana.bioinfo87 • 160
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... Try this command
grep -e "gene_id" -w -m 3 "$next" Input_file.gtf
It will extract the whole line with respect to three exons. ...
written 18 days ago by
archana.bioinfo87 • 160
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... I think better to write a small code either in R or using awk in linux. I know there are various ways to do this. ...
written 18 days ago by
archana.bioinfo87 • 160
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Comment:
C: boxplot with jitter
... Thank you Ravi finally solved without much modification. ...
written 18 days ago by
archana.bioinfo87 • 160
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... You can install Ubuntu 18 on your windows 10 side by side and it doesn't require anything else. It is very easy to install and installation will take a few minutes. I am using this for large data set analysis and never faced any issues.
Just go to Microsoft store and search for Ubuntu and get it wh ...
written 19 days ago by
archana.bioinfo87 • 160
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Comment:
C: boxplot with jitter
... Thanks for pointing it out. I will correct it. ...
written 20 days ago by
archana.bioinfo87 • 160
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Comment:
C: boxplot with jitter
... Ok, thanks. I will try this. ...
written 20 days ago by
archana.bioinfo87 • 160
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