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0
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41k
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Answer:
A: Concatenating fastq.gz files across lanes
3.8 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
1.4k
views
Answer:
C: Converting multiple GSE data into expression matrix
4.5 years ago by
Satyajeet Khare
★ 1.6k
4
votes
0
replies
806
views
Answer:
A: problem with vcf file by gatk
4.6 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
3.0k
views
Answer:
A: Error in match.arg in boxplot - oligo package
5.0 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
1.4k
views
Answer:
A: match gives me all NA in annotating my genes
6.1 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
2.9k
views
Answer:
C: Files to compare ChIP vs Input on genome browser: after alignment or peak callin
6.2 years ago by
Satyajeet Khare
★ 1.6k
4
votes
0
replies
15k
views
Answer:
A: Setting the first row as column name in R
6.3 years ago by
Satyajeet Khare
★ 1.6k
4
votes
1
reply
6.4k
views
Answer:
A: bash script for RNA seq analysis
6.6 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
1.4k
views
Answer:
A: ncRNA (lincRNA) in ribodepleted RNAseq
6.6 years ago by
Satyajeet Khare
★ 1.6k
3
votes
0
replies
1.4k
views
Answer:
C: Tool for finding peaks from Chip-seq data at multiple regions.
6.6 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
1.9k
views
Answer:
C: Normalisation using Input DNA & calling peaks [Chip-seq]
6.6 years ago by
Satyajeet Khare
★ 1.6k
2
votes
0
replies
3.3k
views
Answer:
C: Is there a way to fetch genomic sequences at given coordinates without downloadi
6.6 years ago by
Satyajeet Khare
★ 1.6k
2
votes
1
reply
11k
views
Answer:
C: fpkm to tpm conversion
6.6 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
3.4k
views
Answer:
C: Downloading annotation file for human transcriptome
6.6 years ago by
Satyajeet Khare
★ 1.6k
3
votes
0
replies
3.1k
views
Answer:
A: STAR vs STAR-fusion
6.6 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
3.1k
views
Answer:
A: Most variable gene from the differentially expressed genes
6.6 years ago by
Satyajeet Khare
★ 1.6k
2
votes
0
replies
2.1k
views
Answer:
A: [hg19] Reading genes with CCDS
6.6 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
4.7k
views
Answer:
C: (ERR): bowtie2-align exited with value 1
6.6 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
1.9k
views
Answer:
A: Normalization of RNA-seq data
6.6 years ago by
Satyajeet Khare
★ 1.6k
3
votes
1
reply
2.3k
views
Answer:
A: Looking for recommendations of R package for GO enrichment analysis based on gen
6.6 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
10k
views
Answer:
A: Downloading the latest human genome
6.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
2.7k
views
Answer:
C: ChIP-nexus peak call
6.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
2.2k
views
Answer:
A: Creation of Transcript expression file
6.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
2.6k
views
Answer:
A: Optimization of RNA-Seq data mapping with tophat2
6.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
5.4k
views
Answer:
A: Regarding getting gene count tables for DeSeq from StringTie using prepDE.py
6.7 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
2.1k
views
Answer:
A: Cuffdiff contrast run error: "Malformed record in sample sheet" and "cuffdiff re
6.7 years ago by
Satyajeet Khare
★ 1.6k
3
votes
1
reply
2.1k
views
Answer:
A: No XIST in Emsembl cdna.fa
6.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
2.9k
views
Answer:
A: Presenting differential expression data containing infinite log2(Fold Change)s
6.7 years ago by
Satyajeet Khare
★ 1.6k
2
votes
1
reply
2.3k
views
Answer:
A: Differences in FPKM values for same sample in multiple comparisons
6.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
2.9k
views
Answer:
A: readcufflinks shows error in R cummeRbund Package
6.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
2.0k
views
Answer:
A: hisat2 run gave 0% alignment
6.7 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
2.4k
views
Answer:
A: miRNA IDENTIFICATION from RNA seq DATA
6.8 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
1.7k
views
Answer:
C: Pipeline for analysing RNA-seq exon level data with lot of samples?
6.8 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
2.4k
views
Answer:
A: RNA-Seq : merged.gtf file from cuffmerge where exons are duplicated (two exons w
6.8 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
2.8k
views
Answer:
A: [Cuffdiff] Differentially Expressed Genes and Transcript Analyses
7.0 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
3.5k
views
Answer:
A: Is it correct cammand for hisat indexing
7.3 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
6.6k
views
Answer:
A: CONVERT GFF TO GTF
7.3 years ago by
Satyajeet Khare
★ 1.6k
2
votes
0
replies
1.6k
views
Answer:
A: CUFFMERGE from many assemblies to define transcripts but only compare a subset?
7.4 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
2.3k
views
Answer:
A: sra to fastq conversion - paired-end file won't split
7.4 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
1.7k
views
Answer:
A: trancriptome analysis using rna-seq data
7.4 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
2.4k
views
Answer:
A: How to get lncRNA seqences from an annotation file?
7.4 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
1.5k
views
Answer:
A: Significant genes in RNA-seq
7.4 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
2.3k
views
Answer:
A: High p-values generated from CuffDiff
7.4 years ago by
Satyajeet Khare
★ 1.6k
1
vote
1
reply
1.9k
views
Answer:
A: Plasmodium berghei Alternative splicing sites ,how to predict if alternative spl
7.5 years ago by
Satyajeet Khare
★ 1.6k
0
votes
1
reply
2.1k
views
Answer:
A: Is it correct to merge bigwig with TPM values from rnaSeq from different biologi
7.5 years ago by
Satyajeet Khare
★ 1.6k
4
votes
2
replies
2.1k
views
Answer:
A: How can I get Nanog PWM
7.5 years ago by
Satyajeet Khare
★ 1.6k
1
vote
0
replies
6.8k
views
Answer:
A: peaks overlap: ATAC & CHIP seq
updated 7.5 years ago by
Ian
6.0k • written 7.5 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
1.9k
views
Answer:
A: the difference between human and mouse wiggle files for uploading on UCSC
7.5 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
1.6k
views
Answer:
A: DBMS system for NCBI/Genbank data?
7.5 years ago by
Satyajeet Khare
★ 1.6k
0
votes
0
replies
2.5k
views
Answer:
A: PCR duplicata and de novo assembly ??
7.5 years ago by
Satyajeet Khare
★ 1.6k
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