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4
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1
reply
6.4k
views
Answer: A: bash script for RNA seq analysis
6.6 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
2.7k
views
Comment: C: Finding target genes of a TF
6.6 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
3.2k
views
Comment: C: hisat2-build failed with 'is not reverse-deterministic, so reverse-determinize'2
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
3.2k
views
Comment: C: hisat2-build failed with 'is not reverse-deterministic, so reverse-determinize'2
6.6 years ago by Satyajeet Khare ★ 1.6k
2
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0
replies
6.4k
views
Comment: C: bash script for RNA seq analysis
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
3.3k
views
Comment: C: Genome-wide CpG island finder
6.6 years ago by Satyajeet Khare ★ 1.6k
0
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1
reply
6.4k
views
Comment: C: bash script for RNA seq analysis
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
2.9k
views
Comment: C: IGV vs UCSC and comparison
6.6 years ago by Satyajeet Khare ★ 1.6k
2
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1
reply
2.6k
views
Comment: C: Help with the Nature Protocol
6.6 years ago by Satyajeet Khare ★ 1.6k
0
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1
reply
2.6k
views
Comment: C: Help with the Nature Protocol
6.6 years ago by Satyajeet Khare ★ 1.6k
0
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1
reply
16k
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Comment: C: Filtering out low expressed genes in RNA-Seq data
6.6 years ago by Satyajeet Khare ★ 1.6k
0
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0
replies
1.4k
views
Answer: A: ncRNA (lincRNA) in ribodepleted RNAseq
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
2.7k
views
Comment: C: Finding target genes of a TF
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
12k
views
Comment: A: Different alignment rates for Hisat2 and STAR, Hisat2 has lower alignment rate a
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
1.4k
views
Comment: C: Analyzing specific genes in a microarray (RNA expression)
6.6 years ago by Satyajeet Khare ★ 1.6k
3
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0
replies
1.4k
views
Answer: C: Tool for finding peaks from Chip-seq data at multiple regions.
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
38k
views
Comment: C: Converting a VCF with SNPs and indels to BED format
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
1.9k
views
Answer: C: Normalisation using Input DNA & calling peaks [Chip-seq]
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
38k
views
Comment: C: Converting a VCF with SNPs and indels to BED format
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
38k
views
Comment: C: Converting a VCF with SNPs and indels to BED format
6.6 years ago by Satyajeet Khare ★ 1.6k
2
votes
0
replies
3.3k
views
Answer: C: Is there a way to fetch genomic sequences at given coordinates without downloadi
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
3.2k
views
Comment: C: RNASeq lane effect
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
11k
views
Comment: C: fpkm to tpm conversion
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
11k
views
Comment: C: fpkm to tpm conversion
6.6 years ago by Satyajeet Khare ★ 1.6k
2
votes
1
reply
11k
views
Answer: C: fpkm to tpm conversion
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
5.4k
views
Comment: C: How to manipulate a gff or gtf file manually?
6.6 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
3.4k
views
Answer: C: Downloading annotation file for human transcriptome
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
3.4k
views
Comment: A: Downloading annotation file for human transcriptome
6.6 years ago by Satyajeet Khare ★ 1.6k
3
votes
0
replies
3.1k
views
Answer: A: STAR vs STAR-fusion
6.6 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
1.5k
views
Comment: C: Length distribution of PacBio RNA-seq
6.6 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
4.3k
views
Comment: C: Aligning multiple fastq files in Bowtie2
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
3.1k
views
Answer: A: Most variable gene from the differentially expressed genes
6.6 years ago by Satyajeet Khare ★ 1.6k
2
votes
0
replies
2.1k
views
Answer: A: [hg19] Reading genes with CCDS
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
2.0k
views
Comment: C: refseq transcriptome annotation
6.6 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
4.7k
views
Answer: C: (ERR): bowtie2-align exited with value 1
6.6 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
1.9k
views
Comment: C: Normalization of RNA-seq data
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
1.9k
views
Answer: A: Normalization of RNA-seq data
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
2.0k
views
Comment: C: Rn28s1 28S ribosomal RNA [ Mus musculus] annotation in GTF file
6.6 years ago by Satyajeet Khare ★ 1.6k
3
votes
1
reply
2.3k
views
Answer: A: Looking for recommendations of R package for GO enrichment analysis based on gen
6.6 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
1.9k
views
Comment: C: T Cell Repertoire Deep Sequencing
6.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
3.1k
views
Comment: C: tophat2 "Broken pipe error"
6.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
3.1k
views
Comment: C: tophat2 "Broken pipe error"
6.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
3.1k
views
Comment: C: tophat2 "Broken pipe error"
6.7 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
10k
views
Answer: A: Downloading the latest human genome
6.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
11k
views
Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
6.7 years ago by Satyajeet Khare ★ 1.6k
1
vote
1
reply
5.8k
views
Comment: C: RNASeq gender identification
6.7 years ago by Satyajeet Khare ★ 1.6k
1
vote
0
replies
6.7k
views
Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
6.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
0
replies
2.0k
views
Comment: C: Are all antisense transcripts from polyA enriched library RNA-seq polyadenylated
6.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
11k
views
Comment: A: Difference between CPM and RPM for RNA-seq reada quantification
6.7 years ago by Satyajeet Khare ★ 1.6k
0
votes
1
reply
11k
views
Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
6.7 years ago by Satyajeet Khare ★ 1.6k
283 results • Page 2 of 6
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