User: mkgupta.bioinfo

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Posts by mkgupta.bioinfo

<prev • 13 results • page 1 of 2 • next >
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Comment: C: Mapping probe ids in microarray data to gene ids
... Glad to know the answer :) ...
written 4 weeks ago by mkgupta.bioinfo140
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Answer: A: Mapping probe ids in microarray data to gene ids
... You can easily do this in R.. This is an example of human. library(hgu133plus2.db) library(annotate) library(limma) probeset.list <- read.table("data.txt") gene.symbols <- getSYMBOL(rownames(probeset.list),"hgu133plus2.db") results <- cbi ...
written 4 weeks ago by mkgupta.bioinfo140 • updated 4 weeks ago by ATpoint26k
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Comment: C: How to convert chemdraw file in CDX format either into Mol2 or SDF format?
... @muhammadhassam8 have you tried openbabel ? ...
written 12 weeks ago by mkgupta.bioinfo140
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Seeking Tutorial on codon subsitution model and how we can develop more robust codon substitution models
... Dear member, Currently, I am working on codon substitution models and trying to understand how more robust codon substitution models can be made. Though I am reading literature and book, I would be obliged if people working in the same or related field suggest me some good tutorial and book as well ...
codon substitution models written 12 weeks ago by mkgupta.bioinfo140
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Answer: A: How to convert chemdraw file in CDX format either into Mol2 or SDF format?
... You can convert CDX format either into Mol2 or SDF format using chemdraw also. Open .cdx file in chemdraw and click on File -> Save as -> File Name (Example.sdf or Example.Mol2) and save as type (Select file type of your choice) Hope this help !! ...
written 3 months ago by mkgupta.bioinfo140
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Comment: C: Clustering for Single-cell RNA-seq Data
... It's seems perfect as suggested by Friederike. However, I would like to add few line more: In the end try to make matrix or dataframe, where each row will represent clone ID while each column will represent Cluster ID. Later utilised that data frame or matrix for generating heatmap or barchart as ...
written 3 months ago by mkgupta.bioinfo140
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Answer: A: Issue with Cluster
... **For time duration :** Could you please check if memory and partition of your script look similar like this SBATCH --mem=16G Above 16G means 16 Gb memory have been allocated but if your program demand more memory replace 16G with MaxMemPerNode SBATCH --partition=standard Here generally we use ...
written 3 months ago by mkgupta.bioinfo140
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Comment: C: is fortran still used in bioinformatics?
... No . ...
written 5 months ago by mkgupta.bioinfo140
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Forum: is fortran still used in bioinformatics?
... Recently i was asked by one of the professor to solve problem in FORTRAN. I am already working with PERL, PYTHON, JAVA, C and C++ but now I am thinking "Is it worth to learn FORTRAN in bioinformatics?" Please suggests. Edit: I am thankful to every one who commented and gave their valuable sugges ...
R forum fortan written 5 months ago by mkgupta.bioinfo140
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Is there any free online tool where I can do online docking studies of 1000 ligands with a single protein in a single step .
... Is there any free online tool where I can do online docking studies of 1000 ligands with a single protein in a single step . ...
auotodocking studies written 3.5 years ago by mkgupta.bioinfo140

Latest awards to mkgupta.bioinfo

Popular Question 11 weeks ago, created a question with more than 1,000 views. For is fortran still used in bioinformatics?
Appreciated 3 months ago, created a post with more than 5 votes. For A: Issue with Cluster
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Why RMA method is better than Median method for normalising microarray data?
Teacher 3.5 years ago, created an answer with at least 3 up-votes. For A: Why RMA method is better than Median method for normalising microarray data?
Scholar 3.6 years ago, created an answer that has been accepted. For A: Why RMA method is better than Median method for normalising microarray data?

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