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User: Manoj

gravatar for Manoj
Manoj • 180
Reputation:
180
Status:
Trusted
Location:
India
Last seen:
9 months, 3 weeks ago
Joined:
4 years, 11 months ago
Email:
m**************@gmail.com

Posts by Manoj

<prev • 15 results • page 1 of 2 • next >
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Comment: C: Co-editor and authors for bioinformatics books
... Thanks @rob and @Dlakic for your detail insight. After considering you valuable suggestion, I have re-defined my requirement. ...
written 10 months ago by Manoj • 180
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Comment: C: how can i change any drug format to pdb format?
... May i know in which file format you can download all drugs. If you can download in SDF or similar file format, split each file using simple PERL or any language script. You can easily do that because if all drug comes in one single file there must demarcation between each drug. Once you have all the ...
written 14 months ago by Manoj • 180
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Comment: C: how can i change any drug format to pdb format?
... Dear ali, if you are downloadling your drug file from drug bank, there is an option for downloading in pdb format Have a look at the link provided below https://www.drugbank.ca/drugs/DB00497 If you click on download option in structure section, there is an option for saving your file in pdb ...
written 15 months ago by Manoj • 180
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Comment: C: Mapping probe ids in microarray data to gene ids
... Glad to know the answer :) ...
written 16 months ago by Manoj • 180
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Answer: A: Mapping probe ids in microarray data to gene ids
... You can easily do this in R.. This is an example of human. library(hgu133plus2.db) library(annotate) library(limma) probeset.list <- read.table("data.txt") gene.symbols <- getSYMBOL(rownames(probeset.list),"hgu133plus2.db") results <- cbi ...
written 16 months ago by Manoj • 180 • updated 16 months ago by ATpoint ♦ 45k
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Comment: C: How to convert chemdraw file in CDX format either into Mol2 or SDF format?
... @muhammadhassam8 have you tried openbabel ? ...
written 18 months ago by Manoj • 180
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Seeking Tutorial on codon subsitution model and how we can develop more robust codon substitution models
... Dear member, Currently, I am working on codon substitution models and trying to understand how more robust codon substitution models can be made. Though I am reading literature and book, I would be obliged if people working in the same or related field suggest me some good tutorial and book as well ...
codon substitution models written 18 months ago by Manoj • 180
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Answer: A: How to convert chemdraw file in CDX format either into Mol2 or SDF format?
... You can convert CDX format either into Mol2 or SDF format using chemdraw also. Open .cdx file in chemdraw and click on File -> Save as -> File Name (Example.sdf or Example.Mol2) and save as type (Select file type of your choice) Hope this help !! ...
written 18 months ago by Manoj • 180
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Comment: C: Clustering for Single-cell RNA-seq Data
... It's seems perfect as suggested by Friederike. However, I would like to add few line more: In the end try to make matrix or dataframe, where each row will represent clone ID while each column will represent Cluster ID. Later utilised that data frame or matrix for generating heatmap or barchart as ...
written 19 months ago by Manoj • 180
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Answer: A: Issue with Cluster
... **For time duration :** Could you please check if memory and partition of your script look similar like this SBATCH --mem=16G Above 16G means 16 Gb memory have been allocated but if your program demand more memory replace 16G with MaxMemPerNode SBATCH --partition=standard Here generally we use ...
written 19 months ago by Manoj • 180

Latest awards to Manoj

Popular Question 12 months ago, created a question with more than 1,000 views. For Why RMA method is better than Median method for normalising microarray data?
Popular Question 18 months ago, created a question with more than 1,000 views. For is fortran still used in bioinformatics?
Appreciated 19 months ago, created a post with more than 5 votes. For A: Issue with Cluster
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Why RMA method is better than Median method for normalising microarray data?
Teacher 4.7 years ago, created an answer with at least 3 up-votes. For A: Why RMA method is better than Median method for normalising microarray data?
Scholar 4.9 years ago, created an answer that has been accepted. For A: Why RMA method is better than Median method for normalising microarray data?
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