User: mkgupta.bioinfo
mkgupta.bioinfo • 140
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Posts by mkgupta.bioinfo
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... Glad to know the answer :) ...
written 4 weeks ago by
mkgupta.bioinfo • 140
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... You can easily do this in R.. This is an example of human.
library(hgu133plus2.db)
library(annotate)
library(limma)
probeset.list <- read.table("data.txt")
gene.symbols <- getSYMBOL(rownames(probeset.list),"hgu133plus2.db")
results <- cbi ...
written 4 weeks ago by
mkgupta.bioinfo • 140
• updated
4 weeks ago by
ATpoint ♦ 26k
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... @muhammadhassam8 have you tried openbabel ? ...
written 12 weeks ago by
mkgupta.bioinfo • 140
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... Dear member,
Currently, I am working on codon substitution models and trying to understand how more robust codon substitution models can be made. Though I am reading literature and book, I would be obliged if people working in the same or related field suggest me some good tutorial and book as well ...
written 12 weeks ago by
mkgupta.bioinfo • 140
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... You can convert CDX format either into Mol2 or SDF format using chemdraw also.
Open .cdx file in chemdraw and click on File -> Save as -> File Name (Example.sdf or Example.Mol2) and save as type (Select file type of your choice)
Hope this help !! ...
written 3 months ago by
mkgupta.bioinfo • 140
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... It's seems perfect as suggested by Friederike.
However, I would like to add few line more:
In the end try to make matrix or dataframe, where each row will represent clone ID while each column will represent Cluster ID. Later utilised that data frame or matrix for generating heatmap or barchart as ...
written 3 months ago by
mkgupta.bioinfo • 140
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Answer:
A: Issue with Cluster
... **For time duration :**
Could you please check if memory and partition of your script look similar like this
SBATCH --mem=16G
Above 16G means 16 Gb memory have been allocated but if your program demand more memory replace 16G with MaxMemPerNode
SBATCH --partition=standard
Here generally we use ...
written 3 months ago by
mkgupta.bioinfo • 140
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... Recently i was asked by one of the professor to solve problem in FORTRAN.
I am already working with PERL, PYTHON, JAVA, C and C++ but now I am thinking "Is it worth to learn FORTRAN in bioinformatics?"
Please suggests.
Edit:
I am thankful to every one who commented and gave their valuable sugges ...
written 5 months ago by
mkgupta.bioinfo • 140
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... Is there any free online tool where I can do online docking studies of 1000 ligands with a single protein in a single step . ...
written 3.5 years ago by
mkgupta.bioinfo • 140
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