User: Manoj
Manoj • 180
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- India
- Last seen:
- 4 months, 3 weeks ago
- Joined:
- 4 years, 6 months ago
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Posts by Manoj
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... Thanks @rob and @Dlakic for your detail insight. After considering you valuable suggestion, I have re-defined my requirement. ...
written 5 months ago by
Manoj • 180
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... May i know in which file format you can download all drugs.
If you can download in SDF or similar file format, split each file using simple PERL or any language script. You can easily do that because if all drug comes in one single file there must demarcation between each drug.
Once you have all the ...
written 9 months ago by
Manoj • 180
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... Dear ali,
if you are downloadling your drug file from drug bank, there is an option for downloading in pdb format
Have a look at the link provided below
https://www.drugbank.ca/drugs/DB00497
If you click on download option in structure section, there is an option for saving your file in pdb ...
written 9 months ago by
Manoj • 180
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... Glad to know the answer :) ...
written 11 months ago by
Manoj • 180
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... You can easily do this in R.. This is an example of human.
library(hgu133plus2.db)
library(annotate)
library(limma)
probeset.list <- read.table("data.txt")
gene.symbols <- getSYMBOL(rownames(probeset.list),"hgu133plus2.db")
results <- cbi ...
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... @muhammadhassam8 have you tried openbabel ? ...
written 13 months ago by
Manoj • 180
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... Dear member,
Currently, I am working on codon substitution models and trying to understand how more robust codon substitution models can be made. Though I am reading literature and book, I would be obliged if people working in the same or related field suggest me some good tutorial and book as well ...
written 13 months ago by
Manoj • 180
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... You can convert CDX format either into Mol2 or SDF format using chemdraw also.
Open .cdx file in chemdraw and click on File -> Save as -> File Name (Example.sdf or Example.Mol2) and save as type (Select file type of your choice)
Hope this help !! ...
written 13 months ago by
Manoj • 180
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... It's seems perfect as suggested by Friederike.
However, I would like to add few line more:
In the end try to make matrix or dataframe, where each row will represent clone ID while each column will represent Cluster ID. Later utilised that data frame or matrix for generating heatmap or barchart as ...
written 14 months ago by
Manoj • 180
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Answer:
A: Issue with Cluster
... **For time duration :**
Could you please check if memory and partition of your script look similar like this
SBATCH --mem=16G
Above 16G means 16 Gb memory have been allocated but if your program demand more memory replace 16G with MaxMemPerNode
SBATCH --partition=standard
Here generally we use ...
written 14 months ago by
Manoj • 180
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