User: hAjmal

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hAjmal40
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4 years, 7 months ago
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Posts by hAjmal

<prev • 21 results • page 1 of 3 • next >
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Comment: C: NCI-60 dataset in R
... Hi Canin, Is there a way to download raw read counts of NCI-60 data using Rcellminer? ...
written 17 months ago by hAjmal40
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Comment: C: DE analysis of genes with different number of samples in Tumor and control group
... 112 normal and 1100 tumor samples ...
written 17 months ago by hAjmal40
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DE analysis of genes with different number of samples in Tumor and control group
... Hi, I am usng TCGA biolinks to do DE analysis of genes in the breast cancer TCGA data. The number of samples in normal and tumor groups are different. Is is possible to do DE analysis with different number of samples in each group? Please guide. ...
tcga tcga biolinks limma differential expression written 17 months ago by hAjmal40 • updated 16 months ago by Biostar ♦♦ 20
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How to normalize NCI-60 gene expression data
... Hi, I want to know how would I do log2 median centered normalization on gene expression of NCI-60 cancer cell lines? The "exp" is the Z-scores, I need log2 median centered data. ...
normalization nci rcellminer rna-seq R written 18 months ago by hAjmal40
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Comment: C: Is miRNA and mRNA data from GDC (TCGA) from same patient samples?
... Thank you for your response. ...
written 4.0 years ago by hAjmal40
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Comment: C: Does TCGA data have miRNA & mRNA expression for same sample ?
... Did you get your answer? If yes please share ...
written 4.0 years ago by hAjmal40
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Is miRNA and mRNA data from GDC (TCGA) from same patient samples?
... Hi All, I am sorry if this question has already been asked or answered, Can anyone please tell me, if the miRNA and mRNA data from TCGA (Now GDC) from same patient or from different patients? ...
tcga gdc rna-seq mirna written 4.0 years ago by hAjmal40 • updated 4.0 years ago by Bill Wysocki100
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Can I combine two different miRNA data sets for my analysis?
... Hi, I have miRNA expression data. From what I read from the documents, *"The samples were labeled using the miRCURY LNA™ microRNA Hi-Power Labeling Kit, Hy3™/Hy5™ and hybridized on the miRCURY LNA™ microRNA Array (7th Gen) following a single-color experimental design."* I want to combine it with ...
geo mirna data integration hybridization protocol written 4.4 years ago by hAjmal40
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Comment: C: TN and TP samples in TCGA
... Thanks TriS. Excuse me if i am wrong, but there are many breast cancer samples in TCGA data e-g. TCGA-BH-A0BJ-01A-11R-A056-07 and TCGA-BH-A0BJ-11A-23R-A089-07 These have first 12 characters same. Does that not mean they are of same patient? one healthy site (01A) and one from tumorous site (11A)? ...
written 4.5 years ago by hAjmal40
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Answer: A: Is the PAM50 subtype available for TCGA BRCA data?
... You can use TCGAbiolinks to retrieve the list source("http://www.bioconductor.org/biocLite.R") library(TCGAbiolinks) cancer <- "BRCA" PlatformCancer <- "IlluminaHiSeq_RNASeqV2" dataType <- "rsem.genes.results" pathCancer <- "TCGAData/miRNA" datQuery < ...
written 4.5 years ago by hAjmal40

Latest awards to hAjmal

Popular Question 17 months ago, created a question with more than 1,000 views. For TN and TP samples in TCGA
Popular Question 17 months ago, created a question with more than 1,000 views. For Determining Up and Down regulated genes from GEO GDS4296
Popular Question 17 months ago, created a question with more than 1,000 views. For Is miRNA and mRNA data from GDC (TCGA) from same patient samples?
Popular Question 4.0 years ago, created a question with more than 1,000 views. For Determining Up and Down regulated genes from GEO GDS4296
Popular Question 4.0 years ago, created a question with more than 1,000 views. For Normal Patient Samples from GSE62944

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