User: hAjmal

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hAjmal30
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Posts by hAjmal

<prev • 17 results • page 1 of 2 • next >
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Comment: C: Is miRNA and mRNA data from GDC (TCGA) from same patient samples?
... Thank you for your response. ...
written 2.1 years ago by hAjmal30
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Comment: C: Does TCGA data have miRNA & mRNA expression for same sample ?
... Did you get your answer? If yes please share ...
written 2.1 years ago by hAjmal30
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Is miRNA and mRNA data from GDC (TCGA) from same patient samples?
... Hi All, I am sorry if this question has already been asked or answered, Can anyone please tell me, if the miRNA and mRNA data from TCGA (Now GDC) from same patient or from different patients? ...
tcga gdc rna-seq mirna written 2.1 years ago by hAjmal30 • updated 2.1 years ago by Bill Wysocki100
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Can I combine two different miRNA data sets for my analysis?
... Hi, I have miRNA expression data. From what I read from the documents, *"The samples were labeled using the miRCURY LNA™ microRNA Hi-Power Labeling Kit, Hy3™/Hy5™ and hybridized on the miRCURY LNA™ microRNA Array (7th Gen) following a single-color experimental design."* I want to combine it with ...
geo mirna data integration hybridization protocol written 2.5 years ago by hAjmal30
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Comment: C: TN and TP samples in TCGA
... Thanks TriS. Excuse me if i am wrong, but there are many breast cancer samples in TCGA data e-g. TCGA-BH-A0BJ-01A-11R-A056-07 and TCGA-BH-A0BJ-11A-23R-A089-07 These have first 12 characters same. Does that not mean they are of same patient? one healthy site (01A) and one from tumorous site (11A)? ...
written 2.6 years ago by hAjmal30
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Answer: A: Is the PAM50 subtype available for TCGA BRCA data?
... You can use TCGAbiolinks to retrieve the list source("http://www.bioconductor.org/biocLite.R") library(TCGAbiolinks) cancer <- "BRCA" PlatformCancer <- "IlluminaHiSeq_RNASeqV2" dataType <- "rsem.genes.results" pathCancer <- "TCGAData/miRNA" datQuery < ...
written 2.6 years ago by hAjmal30
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Comment: C: TN and TP samples in TCGA
... So what you mean to say is, that NT can be the normal tissue sample of same patient if the rest of the barcode matches a TP sample. It is a control sample (normal person) if the rest of the barcode is not present in TP samples? ...
written 2.6 years ago by hAjmal30
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TN and TP samples in TCGA
... Hi, Can someone tell me, if TN samples are normal tissue samples from the 'same' human extracted from a non-tumourous site? or from another healthy human matched by age sex etc? ...
barcode tcga matched normals written 2.6 years ago by hAjmal30 • updated 2.6 years ago by TriS3.5k
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Normal Patient Samples from GSE62944
... Hello, I am trying to do Differential Expression Analysis of Genes of Normal vs. Breast cancer patients. For that ourpose, I chose GEO data GSE62944 as it contains 9264 Tumour Samples and 741 normal samples. Question 1: I load the expression set using code library(AnnotationHub) ah = ...
geo expressionset gse62944 deanalysis written 2.7 years ago by hAjmal30 • updated 2.7 years ago by genomax59k
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Comment: C: Determining Up and Down regulated genes from GEO GDS4296
... The acession number is GEO GDS4296 ...
written 2.7 years ago by hAjmal30

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