User: Santosh Anand

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Santosh Anand2.8k
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Posts by Santosh Anand

<prev • 478 results • page 1 of 48 • next >
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Comment: C: Presenting differential expression data containing infinite log2(Fold Change)s
... Which tool did you use for differential analysis? The chances are very high that the final output is already log2(FC). On the other hand, adding a tiny number to avoid taking log of zero is quite accepted. ...
written 1 day ago by Santosh Anand2.8k
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Comment: C: How to do GSEA from gene profiles obtained from GEO
... You must need one metric to rank the data. Because, the algorithm looks if there are enriched set at the top or bottom of a ranked list. Then you can run gseapreranked. How are your profiles created? Isn't there any metric which can rank the genes in the profile? ...
written 8 days ago by Santosh Anand2.8k
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Comment: C: How to do GSEA from gene profiles obtained from GEO
... Read the FAQ: http://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/FAQ The various scenario of running GSEA are clearly explained there. ...
written 8 days ago by Santosh Anand2.8k
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Answer: A: randfold - problem with installation
... The error says that LD-linker is not able to find the respective librarary. What was your commandline for installing the program? Did you check that all the dependencies are installed? ...
written 8 days ago by Santosh Anand2.8k
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Answer: A: How to identify your analytic data is true?
... What is your definition of **truth**? If you are just worried about the samples being mislabeled/exchanged, then there are various means to diagnose it. Also given the fact that samples are run in replicates, if something odd happens to one or some of them, you might see it from various computationa ...
written 8 days ago by Santosh Anand2.8k
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Comment: C: How to identify your analytic data is true?
... Exchange of sample labeling has happened to me, not once, not twice but thrice, both with sequencing and microarray! It is easy to detect it through clustering and correlations, however, if the mixed-up sample is completely unrelated, that might be a problem, depending upon how much close it is to t ...
written 8 days ago by Santosh Anand2.8k
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Comment: C: question about survival anaylsis of TCGA mRNA expression data
... Check http://www.oncolnc.org/ and https://www.biostars.org/p/153013/ ...
written 9 days ago by Santosh Anand2.8k
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Comment: C: rRNA in human
... Also see this thread http://seqanswers.com/forums/showthread.php?t=41868 You maybe able to get rRNA from GENCODE too (biotype = rRNA) https://www.gencodegenes.org/gencode_biotypes.html ...
written 11 days ago by Santosh Anand2.8k
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Comment: C: How to identify a gene and a transcription factor?
... http://jaspar.genereg.net http://hocomoco.autosome.ru ...
written 11 days ago by Santosh Anand2.8k
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Comment: C: problems in data frame
... Yes, that's a much better way. In my mind, I was thinking to be as close to the OPs request as possible (so getting data1 and data2 as individual data.frames). data.table can be quirky sometimes (e.g. column manipulation), although the class is both data.table and data.frame. Also, the printing of ...
written 15 days ago by Santosh Anand2.8k

Latest awards to Santosh Anand

Teacher 16 days ago, created an answer with at least 3 up-votes. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Scholar 16 days ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Scholar 19 days ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Scholar 4 weeks ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Commentator 4 weeks ago, created a comment with at least 3 up-votes. For C: Merge two BAM files with different but overlapping reference sequences?
Scholar 4 weeks ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Scholar 5 weeks ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Scholar 5 weeks ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Scholar 8 weeks ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Voter 11 weeks ago, voted more than 100 times.
Scholar 3 months ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Teacher 3 months ago, created an answer with at least 3 up-votes. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Scholar 3 months ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Scholar 3 months ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Merge two BAM files with different but overlapping reference sequences?
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Merge two BAM files with different but overlapping reference sequences?
Teacher 3 months ago, created an answer with at least 3 up-votes. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Appreciated 3 months ago, created a post with more than 5 votes. For A: read.table does not read in all rows!
Scholar 3 months ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Teacher 3 months ago, created an answer with at least 3 up-votes. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Scholar 3 months ago, created an answer that has been accepted. For C: Visualizing hg19 and hg38 FPKMs in a single plot
Teacher 3 months ago, created an answer with at least 3 up-votes. For C: Visualizing hg19 and hg38 FPKMs in a single plot

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