User: clizama

gravatar for clizama
clizama0
Reputation:
0
Status:
New User
Last seen:
1 month, 3 weeks ago
Joined:
1 year, 10 months ago
Email:
c******@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by clizama

<prev • 11 results • page 1 of 2 • next >
0
votes
0
answers
164
views
0
answers
Comment: A: Galaxy for RNASEQ CHIPSeq analysis
... thank you, I will do it. ...
written 7 weeks ago by clizama0
0
votes
0
answers
164
views
0
answers
Galaxy for RNASEQ CHIPSeq analysis
... Hi, I used to use galaxy in amazon web services (from UCDAVIS). Looks like the public AMI is not running property anymore. I was wondering if has any other public AMI in amazon web services to run a galaxy instances or in other cloud. I was trying to use cloudman to run a galaxy instances in a ...
galaxy written 7 weeks ago by clizama0
0
votes
1
answer
291
views
1
answer
Fr-unstranded vs Fr-first strand
... Just curiosity: I know some Library preps kits are Strand specific and others no. In the case of strand specific, for example FR-First strand What happen if I do a analysis using FR-unstraded and FR-first strand for the same data using top-hat. I should have different numbers of count with HT- ...
rna-seq written 4 months ago by clizama0 • updated 4 months ago by Kevin Blighe11k
0
votes
0
answers
1.1k
views
0
answers
Comment: C: tophat error help
... Yeah I'm working in try to change the number of threads, my problem is Im runing tophat in galaxy and I couldnt find the option to change the number of threads from 8 to 1. ...
written 22 months ago by clizama0
0
votes
3
answers
766
views
3
answers
Comment: C: RNAseq problems with tophat
... I'm trying to find how to do it. still working on it. ...
written 22 months ago by clizama0
0
votes
0
answers
1.1k
views
0
answers
tophat error help
... I was running tophat using galaxy in amazon cloud and I git this error, someone can help me to fix it. ``` [2016-03-24 07:39:10] Checking for Bowtie Bowtie version: 2.2.3.0 [2016-03-24 07:39:10] Checking for Bowtie index files (genome).. Found both Bowtie1 and Bowtie2 indexes. [2016-03-24 07:39:1 ...
rna-seq written 22 months ago by clizama0 • updated 22 months ago by Ram13k
0
votes
3
answers
766
views
3
answers
Comment: C: RNAseq problems with tophat
... I'm running the tophat from galaxy I'm not sure how to change the number of threads? Can you explain me a little more please Thanks carlos ...
written 22 months ago by clizama0
0
votes
3
answers
766
views
3
answers
Comment: C: RNAseq problems with tophat
... I added the full error ...
written 22 months ago by clizama0
0
votes
3
answers
766
views
3
answers
Comment: C: RNAseq problems with tophat
... 2016-03-24 07:39:10] Checking for Bowtie Bowtie version: 2.2.3.0 [2016-03-24 07:39:10] Checking for Bowtie index files (genome).. Found both Bowtie1 and Bowtie2 indexes. [2016-03-24 07:39:10] Checking for reference FASTA file [2016-03-24 07:39:10] Generating SAM header for /data/refs/mm10/genome.fa ...
written 22 months ago by clizama0
0
votes
3
answers
766
views
3
answers
Answer: A: RNAseq problems with tophat
... [2016-03-24 07:39:10] Beginning TopHat run (v2.0.13) ----------------------------------------------- [2016-03-24 07:39:10] Checking for Bowtie Bowtie version: 2.2.3.0 [2016-03-24 07:39:10] Checking for Bowtie index files (genome).. Found both Bowtie1 and Bowtie2 indexes. [2016-03-24 07:39:10] ...
written 22 months ago by clizama0

Latest awards to clizama

Popular Question 4 months ago, created a question with more than 1,000 views. For tophat error help

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 868 users visited in the last hour