User: wljlinksly

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wljlinksly50
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Posts by wljlinksly

<prev • 14 results • page 1 of 2 • next >
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Answer: A: How to Extract Multiple Sequence from Multi Fasta File by sequence names
... hopefully this will work https://github.com/wulj2/fa2fas ...
written 19 days ago by wljlinksly50
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Comment: C: analyse bam file
... what you choose can not be more right ...
written 25 days ago by wljlinksly50
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Comment: A: analyse bam file
... strongly recommend samtools stats ...
written 26 days ago by wljlinksly50
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Comment: A: Best Practices / Faster Samtools Mpileup, Any Tips?
... why not code your own pileup module in C/C++ with htslib, in which you will get more control on what data to pileup, how to pileup, and what to do with the pileup directly on the fly? ...
written 4 weeks ago by wljlinksly50
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Answer: A: Code/Tool to locally do sequence alignment
... maybe, muscle(https://www.drive5.com/muscle/ )will help you out ...
written 4 weeks ago by wljlinksly50
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Comment: C: what is the mean of the file "*._f1.fq.gz" and "*._r2.fa.gz"
... you are right, zcat is just a bash script, what it depends on is gzip ...
written 4 weeks ago by wljlinksly50
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Comment: A: what is the mean of the file "*._f1.fq.gz" and "*._r2.fa.gz"
... how about this command, which is much shorter zcat filename | head ...
written 4 weeks ago by wljlinksly50
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Answer: A: Splitting Multifasta file to individual files
... you can download this repo: https://github.com/wulj2/fa2fas and execute make command in the repo, you will get the desired fa2fas executable binary ./fa2fas Usage: fa2fs [options] Options: -i FILE input fasta file -o DIR output directory ...
written 5 weeks ago by wljlinksly50
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Comment: A: BGI sequencer and his output
... https://www.bgi.com/global/resources/sequencing-platforms/ this might be helpful ...
written 5 weeks ago by wljlinksly50
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Answer: A: Gencore : /usr/bin/ld: cannot find -lhts
... install htslib(https://github.com/samtools/htslib) will be okay ...
written 5 weeks ago by wljlinksly50

Latest awards to wljlinksly

Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: k-mer finding and counting

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