User: wljlinksly

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wljlinksly50
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Posts by wljlinksly

<prev • 16 results • page 1 of 2 • next >
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Answer: A: bcftools missing most indels in variant calling
... bcftools is not so sensitive for calling variants with very low frequency or with very few supports, and all the indels at one position will be made into only one consensus if I have got the source code working right~ ...
written 25 days ago by wljlinksly50
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Answer: A: Gene Location File - One Gene One Genomic Interval
... interesting problem to solve, but i think it will be easy ...
written 7 weeks ago by wljlinksly50
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Answer: A: How to Extract Multiple Sequence from Multi Fasta File by sequence names
... hopefully this will work https://github.com/wulj2/fa2fas ...
written 4 months ago by wljlinksly50
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Comment: C: analyse bam file
... what you choose can not be more right ...
written 5 months ago by wljlinksly50
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Comment: A: analyse bam file
... strongly recommend samtools stats ...
written 5 months ago by wljlinksly50
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Comment: A: Best Practices / Faster Samtools Mpileup, Any Tips?
... why not code your own pileup module in C/C++ with htslib, in which you will get more control on what data to pileup, how to pileup, and what to do with the pileup directly on the fly? ...
written 5 months ago by wljlinksly50
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Answer: A: Code/Tool to locally do sequence alignment
... maybe, muscle(https://www.drive5.com/muscle/ )will help you out ...
written 5 months ago by wljlinksly50
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Comment: C: what is the mean of the file "*._f1.fq.gz" and "*._r2.fa.gz"
... you are right, zcat is just a bash script, what it depends on is gzip ...
written 5 months ago by wljlinksly50
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Comment: A: what is the mean of the file "*._f1.fq.gz" and "*._r2.fa.gz"
... how about this command, which is much shorter zcat filename | head ...
written 5 months ago by wljlinksly50
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Answer: A: Splitting Multifasta file to individual files
... you can download this repo: https://github.com/wulj2/fa2fas and execute make command in the repo, you will get the desired fa2fas executable binary ./fa2fas Usage: fa2fs [options] Options: -i FILE input fasta file -o DIR output directory ...
written 5 months ago by wljlinksly50

Latest awards to wljlinksly

Teacher 5 months ago, created an answer with at least 3 up-votes. For A: k-mer finding and counting

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