User: alexandra.lanot

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Posts by alexandra.lanot

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Comment: C: Sequence extract from a big fast file
... Hi, I am a novice using R to split a FASTA file with 300 000 contigs into 6 file of less than 50 000 contigs. I have seen many options but would anyone advise anything that I could be used in R? Thank you A ...
written 3.2 years ago by alexandra.lanot0
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Comment: C: How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Seque
... I am sorry to ask a certainly silly question but I am trying to do this with a fasta file containing 300 000 contigs to separate in 6 files of less than 50 000 sequences. I have made a test.fa file containing 15 sequences to try awk described above did not work in R (may be obvious) I have just st ...
written 3.2 years ago by alexandra.lanot0
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Can I used GFOLD or EdgeR to identify DEG in a time-course type experiment with no replication?
... Dear all, I am new to Bioinformatic but I hope my question will make some sense. I need to analyse my RNASeq data: 7 samples corresponding to different developmental stages but no replication (I know that this is bad). I was thinking of using EdgeR or GFOLD. Most of the information I have seen is t ...
rna-seq written 3.4 years ago by alexandra.lanot0 • updated 3.4 years ago by WouterDeCoster40k

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