User: Sourabh J

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Sourabh J0
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Posts by Sourabh J

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Comment: C: Picking one representative from OrthoMCL cluster
... Thanks jean-karim. This will surely help. ...
written 21 months ago by Sourabh J0
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Comment: C: Picking one representative from OrthoMCL cluster
... Thanks for answering and removing my doubts ...
written 21 months ago by Sourabh J0
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Comment: C: Picking one representative from OrthoMCL cluster
... thanks for answer my goal is to prepare phylogenetic tree for each ortholog group by finding their homologs within nr database. for eg. if i have 50 genes in one OG, than blasting each gene individually in nr databsae to find homolog will be tedious and time consuming. SO, for that I want to select ...
written 21 months ago by Sourabh J0
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Picking one representative from OrthoMCL cluster
... Hi all, I have clustered around 30000 genes from roughly 90 genomes into orthologous groups by using orthoMCL. I want to check the evolutionary force guiding particular orthologous cluster. For that, I have selected longest sequence from each orthologus cluster (to increase phylogenetic spread) to b ...
genome sequence blast written 21 months ago by Sourabh J0 • updated 21 months ago by Jean-Karim Heriche16k
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annotating Multiple Phylogenetic trees on the basis of color
... Hello everyone, I have multiple phylogenetic trees (more than 5000) in newick format and I want to color them according to their tip label. I know this can be done in package ape and phytools in R, but, I am not getting how to annotate multiple trees at once using these packages. What I want is gra ...
phylogenetic analyses R ape written 2.5 years ago by Sourabh J0 • updated 2.5 years ago by Dan Gaston7.1k

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