User: endrebak

gravatar for endrebak
endrebak570
Reputation:
570
Status:
Trusted
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Website:
https://github.com/end...
Last seen:
3 weeks, 4 days ago
Joined:
1 year, 8 months ago
Email:
e*******@ntnu.no

https://www.ntnu.edu/employees/endrebak

https://github.com/endrebak

 

Posts by endrebak

<prev • 76 results • page 1 of 8 • next >
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Comment: C: Convert VCF dosage file into dosage only file
... Missing an \n at the end :): bcftools query -f "%CHROM\t%POS[\t%DS]\n" minimac3.dose.vcf.gz ...
written 8 weeks ago by endrebak570
10
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1
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174
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1
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Is bcf just a bgzipped vcf?
... 99% sure, but could not find the answer on google. Creating this q for other bcf newbs. ...
vcf bcf written 11 weeks ago by endrebak570
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Comment: C: How do I get a list of all species with a fasta genome in UCSC?
... Thanks, I actually wanted the abbrevs like hg38 and so on but this is good too. ...
written 4 months ago by endrebak570
13
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8 follow
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How do I get a list of all species with a fasta genome in UCSC?
... I want to get a list of all genomes in UCSC like mm10, hg38 etc. Is there a simple way to do that? ...
ucsc written 4 months ago by endrebak570 • updated 4 months ago by Matt Shirley8.0k
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Comment: C: generate fastq with bed file
... That generates a fasta, not a fastq :) ...
written 7 months ago by endrebak570
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Comment: C: How Do We Discourage Ad-Hoc Bioinformatic Analyses?
... Snakemake all the things ...
written 8 months ago by endrebak570
1
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3
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3
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Comment: C: How To Convert Gencode Gtf Into Bed Format ?
... Thanks, changed my answer :) ...
written 12 months ago by endrebak570
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Comment: C: epic: new ChIP-Seq caller based on the SICER algorithm
... If you want to discuss bam-support, please do it here: https://github.com/endrebak/epic/issues/44 ...
written 14 months ago by endrebak570
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Comment: C: epic: new ChIP-Seq caller based on the SICER algorithm
... You can scroll down Istvan 🙂 ...
written 14 months ago by endrebak570
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Comment: C: epic: new ChIP-Seq caller based on the SICER algorithm
... You will probably rerun the analyses many times. Having to run a time-consuming conversion step (the most time-consuming one in the algorithm) each time would be silly. It is also IO-intensive so parallell execution would not help much. I am not just writing epic but a lot of helper scripts for ChI ...
written 14 months ago by endrebak570

Latest awards to endrebak

Popular Question 7 weeks ago, created a question with more than 1,000 views. For Script to compute the effective genome size: epic-effective
Popular Question 7 months ago, created a question with more than 1,000 views. For epic: new ChIP-Seq caller based on the SICER algorithm
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: How To Convert Gencode Gtf Into Bed Format ?
Voter 15 months ago, voted more than 100 times.
Scholar 16 months ago, created an answer that has been accepted. For A: Given a link that displays genome browser data, how do I download a pdf using a
Student 16 months ago, asked a question with at least 3 up-votes. For Fast datastructure to get counts of overlapping reads per nucleotide (!) in Python?
Supporter 18 months ago, voted at least 25 times.
Appreciated 20 months ago, created a post with more than 5 votes. For epic: new ChIP-Seq caller based on the SICER algorithm
Autobiographer 20 months ago, has more than 80 characters in the information field of the user's profile.
Appreciated 20 months ago, created a post with more than 5 votes. For epic: new ChIP-Seq caller based on the SICER algorithm
Student 20 months ago, asked a question with at least 3 up-votes. For epic: new ChIP-Seq caller based on the SICER algorithm
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: SICER raw data

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