User: endrebak
endrebak • 570
- Reputation:
- 570
- Status:
- Trusted
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- Website:
- https://github.com/end...
- Last seen:
- 5 days, 6 hours ago
- Joined:
- 1 year, 4 months ago
- Email:
- e*******@ntnu.no
https://www.ntnu.edu/employees/endrebak
https://github.com/endrebak
Posts by endrebak
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0
votes
3
answers
178
views
3
answers
... Thanks, I actually wanted the abbrevs like hg38 and so on but this is good too. ...
written 4 weeks ago by
endrebak • 570
13
votes
3
answers
178
views
8 follow
3
answers
... I want to get a list of all genomes in UCSC like mm10, hg38 etc. Is there a simple way to do that? ...
written 4 weeks ago by
endrebak • 570
• updated
4 weeks ago by
Matt Shirley ♦ 7.7k
0
votes
1
answer
1.0k
views
1
answers
Comment:
C: generate fastq with bed file
... That generates a fasta, not a fastq :) ...
written 4 months ago by
endrebak • 570
0
votes
9
answers
4.4k
views
9
answers
... Snakemake all the things ...
written 4 months ago by
endrebak • 570
1
vote
3
answers
17k
views
3
answers
... Thanks, changed my answer :) ...
written 8 months ago by
endrebak • 570
0
votes
1
answer
1.2k
views
1
answers
... If you want to discuss bam-support, please do it here: https://github.com/endrebak/epic/issues/44
...
written 10 months ago by
endrebak • 570
0
votes
1
answer
1.2k
views
1
answers
... You can scroll down Istvan 🙂 ...
written 10 months ago by
endrebak • 570
0
votes
1
answer
1.2k
views
1
answers
... You will probably rerun the analyses many times. Having to run a time-consuming conversion step (the most time-consuming one in the algorithm) each time would be silly. It is also IO-intensive so parallell execution would not help much.
I am not just writing epic but a lot of helper scripts for ChI ...
written 10 months ago by
endrebak • 570
0
votes
1
answer
436
views
1
answers
Comment:
C: Create bigwigs in python?
... It seems like bw.addEntries would take four enormous lists if I know all the entries upfront. I guess I should chunk the data and add a 1000 entries at a time... ...
written 10 months ago by
endrebak • 570
0
votes
1
answer
436
views
1
answers
Comment:
C: Create bigwigs in python?
... Wonderful, thanks for your effort! Python3 even <3 ...
written 10 months ago by
endrebak • 570
Latest awards to endrebak
Popular Question
3 months ago,
created a question with more than 1,000 views.
For epic: new ChIP-Seq caller based on the SICER algorithm
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: How To Convert Gencode Gtf Into Bed Format ?
Voter
11 months ago,
voted more than 100 times.
Student
11 months ago,
asked a question with at least 3 up-votes.
For I want to store a docker image reproducing a paper. Is there a host for docker images of studies?
Scholar
12 months ago,
created an answer that has been accepted.
For A: Given a link that displays genome browser data, how do I download a pdf using a
Student
12 months ago,
asked a question with at least 3 up-votes.
For Fast datastructure to get counts of overlapping reads per nucleotide (!) in Python?
Supporter
15 months ago,
voted at least 25 times.
Appreciated
16 months ago,
created a post with more than 5 votes.
For epic: new ChIP-Seq caller based on the SICER algorithm
Autobiographer
16 months ago,
has more than 80 characters in the information field of the user's profile.
Appreciated
16 months ago,
created a post with more than 5 votes.
For epic: new ChIP-Seq caller based on the SICER algorithm
Student
16 months ago,
asked a question with at least 3 up-votes.
For epic: new ChIP-Seq caller based on the SICER algorithm
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