User: endrebak
endrebak • 810
- Reputation:
- 810
- Status:
- Trusted
- Location:
- github.com/endrebak
- Website:
- https://github.com/end...
- Last seen:
- 3 months, 2 weeks ago
- Joined:
- 4 years, 2 months ago
- Email:
- e*******@ntnu.no
https://www.ntnu.edu/employees/endrebak
https://github.com/endrebak
Posts by endrebak
<prev
• 134 results •
page 1 of 14 •
next >
2
votes
2
answers
218
views
2
answers
... Method: https://academic.oup.com/bioinformatics/article/32/2/283/1743626
Data: https://bitbucket.org/nygcresearch/ldetect-data/src/master/EUR/fourier_ls-all.bed ...
written 6 months ago by
endrebak • 810
0
votes
2
answers
218
views
2
answers
... Ah, I had no idea. That makes sense :) ...
written 6 months ago by
endrebak • 810
0
votes
2
answers
218
views
2
answers
... I thank you for your reply. I should have been more explicit; I wanted bed files with the ld-blocks to use in my analyses. ...
written 6 months ago by
endrebak • 810
6
votes
2
answers
218
views
2
answers
... When people ask for ld blocks on this forum, this link is often posted:
ftp://ftp.ncbi.nlm.nih.gov/hapmap/ld_data/latest
However, those files merely contain the correlations between snps. How do I use these to compute ld-blocks?
Would be nice if you could post an example script or invocation of a ...
written 6 months ago by
endrebak • 810
0
votes
0
answers
128
views
0
answers
... I can find lots of files that have the annotation state (TSS, Bivalent etc) for each cell type in the epigenome roadmap data, but is there a global file that shows the most common annotation state over all the cell types?
Thanks. ...
written 7 months ago by
endrebak • 810
0
votes
1
answer
1.3k
views
1
answers
... I would love to try to help you. Can you post an issue on the repo? ...
written 9 months ago by
endrebak • 810
0
votes
2
answers
1.2k
views
2
answers
... https://github.com/pyranges/pyrle
Rle arithmetic for Python. Docs here: https://biocore-ntnu.github.io/pyranges/turning-ranges-into-rles.html and here https://biocore-ntnu.github.io/pyranges/an-introduction-to-rles.html ...
written 10 months ago by
endrebak • 810
0
votes
1
answer
182
views
1
answers
... Thanks! I did read the file format specification :) Strange it said nothing there. ...
written 11 months ago by
endrebak • 810
2
votes
1
answer
182
views
1
answer
... 426 rows in the GWAS catalogue contain x in the CHR_POS, like '31776605 x 95917441'
What does it mean? ...
0
votes
0
answers
265
views
0
answers
... I know :) . I use it in my pyranges-library to write to bigwig: https://github.com/biocore-ntnu/pyranges ...
written 12 months ago by
endrebak • 810
Latest awards to endrebak
Popular Question
5 months ago,
created a question with more than 1,000 views.
For How do I make a bigwig file from a matrix of counts?
Scholar
6 months ago,
created an answer that has been accepted.
For A: Given a link that displays genome browser data, how do I download a pdf using a
Popular Question
6 months ago,
created a question with more than 1,000 views.
For How do I make a bigwig file from a matrix of counts?
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Public paired end chip seq dataset, both ChIP and input?
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Public paired end chip seq dataset, both ChIP and input?
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Public paired end chip seq dataset, both ChIP and input?
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Public paired end chip seq dataset, both ChIP and input?
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Fast datastructure to get counts of overlapping reads per nucleotide (!) in Python?
Popular Question
12 months ago,
created a question with more than 1,000 views.
For Public paired end chip seq dataset, both ChIP and input?
Scholar
12 months ago,
created an answer that has been accepted.
For A: Given a link that displays genome browser data, how do I download a pdf using a
Teacher
12 months ago,
created an answer with at least 3 up-votes.
For A: How To Convert Gencode Gtf Into Bed Format ?
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Public paired end chip seq dataset, both ChIP and input?
Appreciated
23 months ago,
created a post with more than 5 votes.
For Script to compute the effective genome size: epic-effective
Good Answer
23 months ago,
created an answer that was upvoted at least 5 times.
For A: How To Convert Gencode Gtf Into Bed Format ?
Popular Question
23 months ago,
created a question with more than 1,000 views.
For Public paired end chip seq dataset, both ChIP and input?
Popular Question
23 months ago,
created a question with more than 1,000 views.
For How do I make a bigwig file from a matrix of counts?
Popular Question
23 months ago,
created a question with more than 1,000 views.
For Different mappability/effective genome fraction with paired end reads? (ChIP-Seq)
Popular Question
23 months ago,
created a question with more than 1,000 views.
For Script to compute the effective genome size: epic-effective
Popular Question
23 months ago,
created a question with more than 1,000 views.
For How do I filter a bam on length with pybedtools?
Popular Question
23 months ago,
created a question with more than 1,000 views.
For Create bigwigs in python?
Centurion
23 months ago,
created 100 posts.
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For Script to compute the effective genome size: epic-effective
Popular Question
3.1 years ago,
created a question with more than 1,000 views.
For epic: new ChIP-Seq caller based on the SICER algorithm
Teacher
3.5 years ago,
created an answer with at least 3 up-votes.
For A: How To Convert Gencode Gtf Into Bed Format ?
Voter
3.7 years ago,
voted more than 100 times.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 2274 users visited in the last hour