User: endrebak

gravatar for endrebak
endrebak570
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570
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1 day, 11 hours ago
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1 year, 11 months ago
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https://github.com/endrebak

 

Posts by endrebak

<prev • 81 results • page 1 of 9 • next >
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Comment: C: Dataset request: RNA-seq experiment that uses both single and paired end data wi
... Do you understand why they say "GSM461176–GSM461181" when GSM461182 etc are also seemingly from the same experiment? E.g. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM461182 ...
written 4 days ago by endrebak570
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Comment: C: Dataset request: RNA-seq experiment that uses both single and paired end data wi
... Upvoted. Will accept when I get it downloaded :) Thanks :) Other suggestions also welcome :) ...
written 4 days ago by endrebak570
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Dataset request: RNA-seq experiment that uses both single and paired end data with multiple experimental conditions
... I want to find an RNA-seq experiment that uses both single and paired end data with multiple experimental conditions. It should be available in the public domain. Do any of you know such a dataset? If not, how can I search online databases to find such a dataset? Thanks, Endre ...
rna-seq sequencing written 4 days ago by endrebak570 • updated 4 days ago by Carlo Yague3.7k
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Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
... Snakemake allows for conditional creation of the DAG and conditional execution of different code based on the input. ...
written 4 weeks ago by endrebak570
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Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
... Snakemake has singularity support with the singularity directive. I haven't used nextflow, but I would be amazed if it is as flexible as Snakemake ...
written 4 weeks ago by endrebak570
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Comment: C: Convert VCF dosage file into dosage only file
... Missing an \n at the end :): bcftools query -f "%CHROM\t%POS[\t%DS]\n" minimac3.dose.vcf.gz ...
written 4 months ago by endrebak570
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Is bcf just a bgzipped vcf?
... 99% sure, but could not find the answer on google. Creating this q for other bcf newbs. ...
vcf bcf written 5 months ago by endrebak570
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Comment: C: How do I get a list of all species with a fasta genome in UCSC?
... Thanks, I actually wanted the abbrevs like hg38 and so on but this is good too. ...
written 7 months ago by endrebak570
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How do I get a list of all species with a fasta genome in UCSC?
... I want to get a list of all genomes in UCSC like mm10, hg38 etc. Is there a simple way to do that? ...
ucsc written 7 months ago by endrebak570 • updated 7 months ago by Matt Shirley8.2k
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Comment: C: generate fastq with bed file
... That generates a fasta, not a fastq :) ...
written 10 months ago by endrebak570

Latest awards to endrebak

Popular Question 4 months ago, created a question with more than 1,000 views. For Script to compute the effective genome size: epic-effective
Popular Question 9 months ago, created a question with more than 1,000 views. For epic: new ChIP-Seq caller based on the SICER algorithm
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: How To Convert Gencode Gtf Into Bed Format ?
Voter 17 months ago, voted more than 100 times.
Scholar 18 months ago, created an answer that has been accepted. For A: Given a link that displays genome browser data, how do I download a pdf using a
Student 18 months ago, asked a question with at least 3 up-votes. For Fast datastructure to get counts of overlapping reads per nucleotide (!) in Python?
Supporter 21 months ago, voted at least 25 times.
Appreciated 22 months ago, created a post with more than 5 votes. For epic: new ChIP-Seq caller based on the SICER algorithm
Autobiographer 22 months ago, has more than 80 characters in the information field of the user's profile.
Appreciated 23 months ago, created a post with more than 5 votes. For epic: new ChIP-Seq caller based on the SICER algorithm
Student 23 months ago, asked a question with at least 3 up-votes. For epic: new ChIP-Seq caller based on the SICER algorithm
Commentator 23 months ago, created a comment with at least 3 up-votes. For C: SICER raw data

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