User: schlogl

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schlogl50
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Last seen:
19 hours ago
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3 years, 8 months ago
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s******@hotmail.com

Posts by schlogl

<prev • 28 results • page 1 of 3 • next >
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Answer: C: Trying to build a transcript data base using makeTranscriptDbFromBiomart but got
... I got it done with makeTxDbFromBiomart... well I guess they change the functions names a lot in R packages. Thsnks ...
written 22 hours ago by schlogl50
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Trying to build a transcript data base using makeTranscriptDbFromBiomart but got a error.
... Hi guys I am trying to learn use R for RNA-SEQ analysis and I am trying some functions and guides from bioconductor, however I am getting some errors. http://www.sthda.com/english/wiki/rna-seq-differential-expression-work-flow-using-deseq2#introduction One of them I quickly found a answer, because ...
software error R rna-seq written 22 hours ago by schlogl50 • updated 22 hours ago by RamRS25k
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Comment: C: Arabidopsis indexed genome
... Thanks I was trying to avoid that but...8( ...
written 5 days ago by schlogl50
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Comment: A: Arabidopsis indexed genome
... I got it. ftp://ftp.ensemblgenomes.org/pub/plants/release-45/fasta/arabidopsis_halleri/dna_index/ Thanks ...
written 5 days ago by schlogl50
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Arabidopsis indexed genome
... Hey guys do you know where I can find the indexed genome for Arabidopsis thaliana for using with hitsat2? Thanks for any direction. I think I found it. Paulo ...
next-gen written 5 days ago by schlogl50
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Comment: C: problem installing prokka
... Hi yes I installed conda as sudo. No I dont tried as a normal user, because it is my personal desktop and just I have access to this pc. ...
written 26 days ago by schlogl50
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Comment: C: problem installing prokka
... ls: cannot access '/home/paulo/anaconda3/lib/site_perl/5.26.2/Algorithm': No such file or directory ...
written 26 days ago by schlogl50
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Comment: C: problem installing prokka
... How could I do that? ...
written 26 days ago by schlogl50
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problem installing prokka
... Hi guys I am trying to install prokka with conda according to this : https://salsa.debian.org/med-team/prokka I don't want to install with apt-get. I got this message: > ERROR conda.core.link:_execute(700): An error occurred while > installing package 'bioconda::perl-algorithm-diff ...
software error written 26 days ago by schlogl50
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Answer: A: Get some errors in a biopython code for split a multifasta genomic file
... Got everything done with: file = 'myfile.fasta' with open(file, "r") as hd: for record in SeqIO.parse(hd, "fasta"): with open(str(record.id[:-2]) + ".fasta", "w") as output_handle: SeqIO.write(record, output_handle, "fasta") Thank you guys for your ...
written 5 weeks ago by schlogl50

Latest awards to schlogl

Scholar 22 hours ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Scholar 5 weeks ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Popular Question 6 months ago, created a question with more than 1,000 views. For Need tips about using the dbNSFP database in my PC

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