User: schlogl

gravatar for schlogl
schlogl70
Reputation:
70
Status:
Trusted
Location:
Brazil-Florianopolis
Last seen:
3 weeks, 5 days ago
Joined:
4 years, 6 months ago
Email:
s******@hotmail.com

Posts by schlogl

<prev • 82 results • page 1 of 9 • next >
0
votes
1
answer
231
views
1
answers
Comment: C: DNA stadistical studies- Local Base Composition Code
... def composicionBasesLocal(seq, window_len = 200, offset = 100, circular = False): lowest = 0 highest = window_len res = [] while highest <= len(seq)-1: window = seq[lowest:highest+1] print(window) if lowest<= len ...
written 6 weeks ago by schlogl70
0
votes
1
answer
231
views
1
answers
Comment: C: DNA stadistical studies- Local Base Composition Code
... check for the indentation of the lowest = lowest + offset highest = highest + offset because you are in a infinite loop. ...
written 6 weeks ago by schlogl70
0
votes
0
answers
56
views
0
answers
Comment: C: Would you guys help to check if my idea if Markov Model is in the right directio
... I trying to build a random sequence based in that dimerxbase model. The dimer is choose randomly from transition matrix (dict) and then the next base of the sequence that is the nuc inside the inner dict. The double loop was to catch the base, but your idea looks more clean. Thanks ...
written 8 weeks ago by schlogl70
0
votes
0
answers
181
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... still not worked even with the correct name! I don't get thet error, but also get a empty file! ...
written 10 weeks ago by schlogl70
0
votes
0
answers
181
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... AF086833.2 Ebola virus - Mayinga, Zaire, 1976, complete genome ...
written 10 weeks ago by schlogl70
0
votes
0
answers
181
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... You got it bro. Thank you so much! 8) ...
written 10 weeks ago by schlogl70
0
votes
0
answers
181
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... The result is: samtools idxstats sorted_SRR1972739.bwa.bam AF086833.2 18959 15279 11 * 0 0 5450 ...
written 10 weeks ago by schlogl70
0
votes
0
answers
181
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... Hi bro...well! I tried that but didn't work too Genomax! 8( ...
written 10 weeks ago by schlogl70
0
votes
0
answers
181
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... Yep! Look here http://www.htslib.org/doc/samtools-view.html[1] [1]: http://www.htslib.org/doc/samtools-view.html ...
written 10 weeks ago by schlogl70 • updated 10 weeks ago by lieven.sterck8.7k
0
votes
0
answers
181
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... sorry. Thank you. Paulo ...
written 10 weeks ago by schlogl70

Latest awards to schlogl

Popular Question 10 months ago, created a question with more than 1,000 views. For Need tips about using the dbNSFP database in my PC
Scholar 10 months ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Supporter 10 months ago, voted at least 25 times.
Scholar 10 months ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Scholar 10 months ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Scholar 12 months ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Popular Question 17 months ago, created a question with more than 1,000 views. For Need tips about using the dbNSFP database in my PC

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1026 users visited in the last hour