User: andersdetermig

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Posts by andersdetermig

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Answer: A: NGSadmix program returns -nan as a result for the admixture proportions of each
... You are using NGSadmix using 25 Million sites which seems like a very large number of SNPs - and you only have 9 individuals. Also it appears like you don't have a minimum minor allele frequency threshold. Given the very low number of individuals I would try a more stringent filter on SNPs for e ...
written 9 months ago by andersdetermig20
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Answer: A: trouble in SNP calling using ANGSD
... try the -doPlink 2 option to generate plink input files (tped/tfam) http://popgen.dk/angsd/index.php/Plink ...
written 2.7 years ago by andersdetermig20

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Scholar 2.7 years ago, created an answer that has been accepted. For A: trouble in SNP calling using ANGSD

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