User: Lynda lyn

gravatar for Lynda lyn
Lynda lyn30
Reputation:
30
Status:
New User
Location:
France
Last seen:
1 year, 11 months ago
Joined:
3 years, 10 months ago
Email:
a***********@gmail.com

Posts by Lynda lyn

<prev • 6 results • page 1 of 1 • next >
1
vote
2
answers
2.5k
views
2
answers
Answer: C: XMFA to MAF
... Thank you Seja Modha for your help :) i found this c++ script to convert xmfa to maf: https://github.com/Wyss/mauve-py/blob/master/mauve/src/mauveAligner/src/xmfa2maf.cpp ...
written 3.1 years ago by Lynda lyn30
0
votes
2
answers
2.5k
views
2
answers
Comment: C: XMFA to MAF
... When i add -f fasta, I get a maf file as output, but by opening the file It doesn't look like a maf file at all, it's a fasta format!. Maf contains more information than fasta format. Bio::AlignIO reads many formats but does not write in every format (the same is true for Bio::SeqIO). AlignIO curr ...
written 3.1 years ago by Lynda lyn30
0
votes
2
answers
2.5k
views
2
answers
Comment: C: XMFA to MAF
... Hi Sej Modha , i tried the perl script. its works to have a fasta format but not to get the maf format. Here is the output of my command: $ ./transform_fasta.pl -i threeway.xmfa -o /home/lynda/Documents/threeway.maf -f maf Converting threeway.xmfa (xmfa) to file /home/lynda/Docume ...
written 3.1 years ago by Lynda lyn30
0
votes
2
answers
2.5k
views
2
answers
Comment: C: XMFA to MAF
... thank you Sej Modha :) i'll try it ! ...
written 3.1 years ago by Lynda lyn30
7
votes
2
answers
2.5k
views
5 follow
2
answers
XMFA to MAF
... Hi everyone :) i want to convert my XMFA file (output of progressiveMauve) into MAF. Has anyone had any luck converting xmfa into maf? And how did you do it? Thanks :) L ...
maf alignment xmfa written 3.1 years ago by Lynda lyn30
3
votes
1
answer
3.1k
views
1
answer
How to get somatic variant from TCGA vcf files
... I want to extract all somatic mutations from TCGA vcf files, I have three sources for each file: samtools-Sniper-VarscanSomatic; and for each one I have a normal and mutated sample column. can i applay varscan commands? ...
vcf somatic mutations written 3.9 years ago by Lynda lyn30 • updated 3.9 years ago by michael.d.mclellan150

Latest awards to Lynda lyn

Popular Question 2.9 years ago, created a question with more than 1,000 views. For How to get somatic variant from TCGA vcf files
Scholar 3.1 years ago, created an answer that has been accepted. For C: XMFA to MAF

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1104 users visited in the last hour