User: Pranavathiyani G

Reputation:
200
Status:
Trusted
Location:
Pondicherry, India
Twitter:
pranavathiani
Last seen:
1 month, 3 weeks ago
Joined:
2 years, 4 months ago
Email:
p*************@gmail.com

PhD Student at Centre for Bioinformatics, Pondicherry University.

Posts by Pranavathiyani G

<prev • 38 results • page 1 of 4 • next >
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Normalised counts of control samples in gene expression matrix
... I have 4 control and 4 treated samples of RNA seq data, for generating gene expression network should i consider adding the normalised counts of control samples in the gene expression matrix? ...
R network expression matrix rna-seq matrix written 7 weeks ago by Pranavathiyani G200 • updated 7 weeks ago by Devon Ryan82k
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Comment: C: How to identify strand of a gene in bacteria?
... If it's not available, is there any way to find it? ...
written 3 months ago by Pranavathiyani G200
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How to identify strand of a gene in bacteria?
... I have a list of genes (sequences) from bacteria and also have the whole genome sequence, how can i know the genes are encoded in positive strand or negative strand? Is there any possible way to find out? ...
bacteria database sequence tool strand written 3 months ago by Pranavathiyani G200 • updated 4 weeks ago by Biostar ♦♦ 20
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Comment: C: Trinotate error DBD::SQLite::db do failed: no such table:
... The command shows the resource doesn't exist now. From where I can download the Trinotate.sqlite.gz?? ...
written 5 months ago by Pranavathiyani G200
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Comment: C: How to visualize Proteome Networks
... Visualization of large scale networks depends on hardware components also? ...
written 8 months ago by Pranavathiyani G200
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Comment: C: How to visualize Proteome Networks
... I wish to analyze in context to disease & gene expression. ...
written 8 months ago by Pranavathiyani G200
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Comment: C: How to visualize Proteome Networks
... So, I can cluster nodes based on GO? Will that make sense? ...
written 8 months ago by Pranavathiyani G200
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How to visualize Proteome Networks
... How can I visualize whole proteome network for any particular organism? Is there any tool or software for this. Cytoscape is one of the tool for visualization of networks, but is there any tool for large scale network visualization? ...
software proteome network visualization tools written 8 months ago by Pranavathiyani G200 • updated 8 months ago by arta520
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How to convert non-model organism micro-array probe ids to gene ids?
... Hello everyone, I am trying to do some micro-array data analysis study of [this data][1]. When I try to get expression data of this data-set using **GEO2R**. I get the list probe ids as result. How can I convert or match to get the gene symbol or ids. Is there any way to convert probe ids of non-m ...
gene tools analysis microarray written 16 months ago by Pranavathiyani G200
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Comment: C: Extract genes from gene list
... Then you can try with [E-utilities][1] Edit: Batch Entrez is working! [1]: https://www.ncbi.nlm.nih.gov/books/NBK25500/ ...
written 19 months ago by Pranavathiyani G200

Latest awards to Pranavathiyani G

Popular Question 3 months ago, created a question with more than 1,000 views. For Trending research areas in Bioinformatics
Popular Question 5 months ago, created a question with more than 1,000 views. For Trending research areas in Bioinformatics
Popular Question 5 months ago, created a question with more than 1,000 views. For Gene Mutation Frequency percentage
Popular Question 5 months ago, created a question with more than 1,000 views. For Ensembl ID to Gene Symbol
Student 5 months ago, asked a question with at least 3 up-votes. For How to define groups in GEO2R tool?
Great Question 8 months ago, created a question with more than 5,000 views. For Ensembl ID to Gene Symbol
Popular Question 8 months ago, created a question with more than 1,000 views. For Trending research areas in Bioinformatics
Popular Question 8 months ago, created a question with more than 1,000 views. For Ensembl ID to Gene Symbol
Popular Question 17 months ago, created a question with more than 1,000 views. For Ensembl ID to Gene Symbol
Popular Question 17 months ago, created a question with more than 1,000 views. For Ensembl ID to Gene Symbol
Autobiographer 20 months ago, has more than 80 characters in the information field of the user's profile.

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