User: grant.hovhannisyan

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Posts by grant.hovhannisyan

<prev • 299 results • page 1 of 30 • next >
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Comment: C: Infer experiment - Failed to determine strandin paired end stranded RNA-seq
... Salmon also can automatically detect strandedness, you can try it. ...
written 2 days ago by grant.hovhannisyan1.3k
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Answer: A: Do STAR genome index and RSEM reference need to be from same files?
... In general its a bad idea to use different reference genomes and annotations, there is a very high chance of some downstream incompatibilities. So unless there is a very strong reason you have to use different files, you should go with the same ones. ...
written 10 days ago by grant.hovhannisyan1.3k
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Comment: C: AddHealth Omics Data Source
... Could be much easier and useful to make a google group even. ...
written 14 days ago by grant.hovhannisyan1.3k
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Comment: C: RGT TypeError: unsupported operand type(s) for +: 'NoneType' and 'int'
... So the first warning message is fixed by downgrading numpy. The main error still persists even when using bowtie2. Will try to email a developer and hope its not one of numerous abandoned bioinformatics packages... ...
written 15 days ago by grant.hovhannisyan1.3k
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Comment: C: motif search with ATACseq
... Hi Aifu, I am wondering which mapping software have you used for your data? ...
written 16 days ago by grant.hovhannisyan1.3k
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Comment: C: RGT TypeError: unsupported operand type(s) for +: 'NoneType' and 'int'
... agreed on python 3 :) Thanks anyways, I will post here if I find workaround. ...
written 16 days ago by grant.hovhannisyan1.3k
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Comment: C: RGT TypeError: unsupported operand type(s) for +: 'NoneType' and 'int'
... Hi Wouter, your suggestion worked, thank you! But now I get another one Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either ...
written 16 days ago by grant.hovhannisyan1.3k
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Comment: C: RGT TypeError: unsupported operand type(s) for +: 'NoneType' and 'int'
... Yes it somehow should be related to pysam... thanks, I will give it a try. ...
written 16 days ago by grant.hovhannisyan1.3k
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RGT TypeError: unsupported operand type(s) for +: 'NoneType' and 'int'
... Hi, I am having troubles with RGT package. When I run rgt-hint footprinting --atac-seq --paired-end --organism=SC SC1.bam SC1_peaks.bed --output-prefix=SC1 and I get the error Traceback (most recent call last): File "/home/ghovhannisyan/.local/bin/rgt-hint", line 11, in sys ...
atacseq rgt tf footprinting written 16 days ago by grant.hovhannisyan1.3k
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Comment: C: Parsimony score of a NJ tree
... Yes I know what you mean, but I don't know if this option exists in MP software. You can have a look in the documentation of the software that you are using (I guess PAUP). ...
written 21 days ago by grant.hovhannisyan1.3k

Latest awards to grant.hovhannisyan

Popular Question 13 days ago, created a question with more than 1,000 views. For Read counts of STAR with gff file
Popular Question 21 days ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Scholar 8 weeks ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Scholar 10 weeks ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Scholar 12 weeks ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Scholar 3 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Guru 4 months ago, received more than 100 upvotes.
Student 4 months ago, asked a question with at least 3 up-votes. For Technical replicates in RNAseq
Popular Question 5 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Scholar 6 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Teacher 6 months ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: gatk tool installation problem
Popular Question 7 months ago, created a question with more than 1,000 views. For Read counts of STAR with gff file
Scholar 8 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Teacher 8 months ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Teacher 9 months ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Commentator 9 months ago, created a comment with at least 3 up-votes. For C: gatk tool installation problem
Teacher 9 months ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Scholar 9 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Scholar 9 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Teacher 9 months ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Centurion 9 months ago, created 100 posts.
Scholar 10 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO

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