User: grant.hovhannisyan

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Posts by grant.hovhannisyan

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Comment: C: Question regarding journal publications
... Plus their service (and this is exactly what they do in fact - offer a service) must be quick and efficient, which is rarely the case. ...
written 15 hours ago by grant.hovhannisyan1.9k
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Answer: A: Question regarding journal publications
... Just for instigating purposes, I will leave it here :) For ref, SESBE2020 meeting ![enter image description here][1] [1]: https://i.ibb.co/tXX31py/EQAqbz9-U8-AAm3sp.jpg ...
written 17 hours ago by grant.hovhannisyan1.9k
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Comment: C: Question regarding journal publications
... agree, it is a nasty business nowadays. But at least many publishers do not charge (or apply a reduced rate) if the authors are from low-income or a lower-middle-income countries. For example, https://www.biomedcentral.com/getpublished/article-processing-charges or https://www.cell.com/cell-reports ...
written 1 day ago by grant.hovhannisyan1.9k
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Comment: C: RNAfold discriminant error
... I am basically running the command `RNAfold -p -d2 --noLP --noDP input.fa -j10 -o output`, where the `input.fa` is a large file with ~1500 lncRNAs (not sure if I can share the file). ...
written 10 days ago by grant.hovhannisyan1.9k
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RNAfold discriminant error
... Anyone knows what the error below in RNAfold means and how to circumvent it (google does not seem to know)? `ERROR: Unexpected large magnitude discriminant` ...
rnafold written 10 days ago by grant.hovhannisyan1.9k
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Answer: A: Compact visualisation of enrichment analysis
... [ClusterProfiler][1] offers a variety of visualization types. [1]: https://yulab-smu.github.io/clusterProfiler-book/ ...
written 15 days ago by grant.hovhannisyan1.9k
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Comment: C: RNA seq with 2 biological replicates
... Another question, are there reference genomes available for both species (host and parasite)? If yes, then your life is easier - sequence your samples with high sequencing depth (for a proper transcript reconstruction for a human, you would typically need around 80-100 mln reads, but I don't know if ...
written 15 days ago by grant.hovhannisyan1.9k
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Comment: C: wgcna network interpretation
... good points, agree with you in general. Though I was wondering if there could be any technical issues that result in this kind of network (I bet there are since its a very heterogenous data). If it would be possible to minimize them, then I'd just go and continue with overall hypothesis-generating a ...
written 18 days ago by grant.hovhannisyan1.9k
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Comment: C: wgcna network interpretation
... thanks! This is a meta-analysis of around 700 samples, and they come from many different conditions and experimental set-ups, so I guess the network is messed up due to this. On the other hand, we are not interested in correlating any modules with any conditions, just interested in the network prope ...
written 18 days ago by grant.hovhannisyan1.9k
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wgcna network interpretation
... Apart from that it looks crap, how would you interpret this WGCNA network? Cheers, ![enter image description here][1] [1]: https://i.ibb.co/Zh84yfD/calb-modules.png ...
wgcna written 18 days ago by grant.hovhannisyan1.9k • updated 18 days ago by i.sudbery7.0k

Latest awards to grant.hovhannisyan

Popular Question 7 days ago, created a question with more than 1,000 views. For STAR for bacterial genome
Great Question 22 days ago, created a question with more than 5,000 views. For Read counts of STAR with gff file
Popular Question 28 days ago, created a question with more than 1,000 views. For STAR for bacterial genome
Popular Question 5 weeks ago, created a question with more than 1,000 views. For STAR for bacterial genome
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Popular Question 5 months ago, created a question with more than 1,000 views. For Display pairwise p values on barplots in ggplot2
Teacher 6 months ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Scholar 6 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Teacher 6 months ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Voter 6 months ago, voted more than 100 times.
Scholar 7 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Popular Question 7 months ago, created a question with more than 1,000 views. For Display pairwise p values on barplots in ggplot2
Popular Question 8 months ago, created a question with more than 1,000 views. For Display pairwise p values on barplots in ggplot2
Scholar 8 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Popular Question 8 months ago, created a question with more than 1,000 views. For Display pairwise p values on barplots in ggplot2
Popular Question 10 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Commentator 10 months ago, created a comment with at least 3 up-votes. For C: gatk tool installation problem
Scholar 11 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Popular Question 11 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Popular Question 12 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Popular Question 13 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Appreciated 14 months ago, created a post with more than 5 votes. For Technical replicates in RNAseq
Good Question 14 months ago, asked a question that was upvoted at least 5 times. For Technical replicates in RNAseq
Popular Question 15 months ago, created a question with more than 1,000 views. For Read counts of STAR with gff file
Popular Question 15 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq

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