User: grant.hovhannisyan

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Posts by grant.hovhannisyan

<prev • 398 results • page 1 of 40 • next >
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Comment: C: VCF to Fasta with out reference
... how would you know what is in between the variants if you don't use reference sequence? ...
written 24 days ago by grant.hovhannisyan2.0k
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Comment: A: How do I match two files using one column as reference?
... Check `merge` function in R. ...
written 29 days ago by grant.hovhannisyan2.0k
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Comment: C: Need help with STAR aligner
... what organism do you work with? for human size genome you would need 32GB of RAM, for organisms with smaller genomes (like yeasts with 10-12 Mb), STAR alignment is doable with a modest laptop. ...
written 4 weeks ago by grant.hovhannisyan2.0k
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Comment: C: Stringtie/Cufflinks with yeast RNAseq
... Hi plat, I eventually used default parameters with `stringtie`, but for `stringtie merge` I set `-g 50` to restrict the distance between the transcirpts that are merged. Plus I always was using IGV to visualize the transcripts and see whether the results were making sense. ...
written 12 weeks ago by grant.hovhannisyan2.0k
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Comment: C: Question regarding journal publications
... Plus their service (and this is exactly what they do in fact - offer a service) must be quick and efficient, which is rarely the case. ...
written 4 months ago by grant.hovhannisyan2.0k
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Answer: A: Question regarding journal publications
... Just for instigating purposes, I will leave it here :) For ref, SESBE2020 meeting ![enter image description here][1] [1]: https://i.ibb.co/tXX31py/EQAqbz9-U8-AAm3sp.jpg ...
written 4 months ago by grant.hovhannisyan2.0k
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Comment: C: Question regarding journal publications
... agree, it is a nasty business nowadays. But at least many publishers do not charge (or apply a reduced rate) if the authors are from low-income or a lower-middle-income countries. For example, https://www.biomedcentral.com/getpublished/article-processing-charges or https://www.cell.com/cell-reports ...
written 4 months ago by grant.hovhannisyan2.0k
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Comment: C: RNAfold discriminant error
... I am basically running the command `RNAfold -p -d2 --noLP --noDP input.fa -j10 -o output`, where the `input.fa` is a large file with ~1500 lncRNAs (not sure if I can share the file). ...
written 4 months ago by grant.hovhannisyan2.0k
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RNAfold discriminant error
... Anyone knows what the error below in RNAfold means and how to circumvent it (google does not seem to know)? `ERROR: Unexpected large magnitude discriminant` ...
rnafold written 4 months ago by grant.hovhannisyan2.0k
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Answer: A: Compact visualisation of enrichment analysis
... [ClusterProfiler][1] offers a variety of visualization types. [1]: https://yulab-smu.github.io/clusterProfiler-book/ ...
written 4 months ago by grant.hovhannisyan2.0k

Latest awards to grant.hovhannisyan

Popular Question 10 weeks ago, created a question with more than 1,000 views. For STAR for bacterial genome
Student 3 months ago, asked a question with at least 3 up-votes. For Technical replicates in RNAseq
Popular Question 3 months ago, created a question with more than 1,000 views. For STAR for bacterial genome
Popular Question 4 months ago, created a question with more than 1,000 views. For STAR for bacterial genome
Popular Question 4 months ago, created a question with more than 1,000 views. For STAR for bacterial genome
Great Question 5 months ago, created a question with more than 5,000 views. For Read counts of STAR with gff file
Popular Question 5 months ago, created a question with more than 1,000 views. For STAR for bacterial genome
Popular Question 5 months ago, created a question with more than 1,000 views. For STAR for bacterial genome
Popular Question 9 months ago, created a question with more than 1,000 views. For Display pairwise p values on barplots in ggplot2
Popular Question 10 months ago, created a question with more than 1,000 views. For Display pairwise p values on barplots in ggplot2
Teacher 10 months ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Scholar 10 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Teacher 10 months ago, created an answer with at least 3 up-votes. For C: weird STAR output, bash scripting problem
Voter 11 months ago, voted more than 100 times.
Scholar 11 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Popular Question 12 months ago, created a question with more than 1,000 views. For Display pairwise p values on barplots in ggplot2
Popular Question 12 months ago, created a question with more than 1,000 views. For Display pairwise p values on barplots in ggplot2
Scholar 12 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Popular Question 13 months ago, created a question with more than 1,000 views. For Display pairwise p values on barplots in ggplot2
Popular Question 15 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Commentator 15 months ago, created a comment with at least 3 up-votes. For C: gatk tool installation problem
Scholar 15 months ago, created an answer that has been accepted. For A: Change sequence in SEQIO
Popular Question 15 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Popular Question 16 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq
Popular Question 18 months ago, created a question with more than 1,000 views. For Technical replicates in RNAseq

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