User: Muhammad Haseeb

Reputation:
50
Status:
New User
Location:
Ajou University, Suwon, South Korea
Website:
http://openwetware.org...
Last seen:
6 months, 2 weeks ago
Joined:
1 year, 7 months ago
Email:
h*********@hotmail.com

I'm Ph.D. Research Scholar in Innate Immunity and Cell Signaling Lab, with a strong interest in Systems Biology and Bio-informatics. I mainly work on Biological Signalling Pathways, Mathematical Modelling and Simulations, Proteomics data and Computer Aided Drug Designing (CADD). I have the most experience with MATLAB (Simulink), Data Structure but starting to get rather efficient in R.

Posts by Muhammad Haseeb

<prev • 14 results • page 1 of 2 • next >
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Comment: C: How to analyze processed data from ArrayExpress?
... Dear b.nota, Thank you very much. The data format are as follow {Reporter Identifier} {RATIO} {G_PROCESSED} {R_PROCESSED} 1 [-0.148533] [42903.2] [30475.9] ........................ ...
written 6 months ago by Muhammad Haseeb50
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How to analyze processed data from ArrayExpress?
... Hi, I have 33 ligands in total, which were analyzed through SAM. Reported in an article entitled "**Analysis of the major patterns of B cell gene expression changes in response to short-term stimulation with 33 single ligands**".  I selected 10 ligands from above data and wants additional analysis b ...
genome R next-gen chip-seq rna-seq written 6 months ago by Muhammad Haseeb50 • updated 5 months ago by Biostar ♦♦ 20
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Comment: C: Fold Change and P-value for different time span?
... Dear Wounter, Thank you for the answer, Can you clarify me, I didn't understand what do you mean by all time points against the first? You mean all time point that is 40 columns of fold change for each time, compare with control? For example: (30min_fold change of **normal** Vs 30min_fold change of ...
written 6 months ago by Muhammad Haseeb50
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Fold Change and P-value for different time span?
... Hi, I hope you all are doing good. My question is that I have log2 gene expression data of four different time span (30min, 1hr, 2hr and 4hr). I want to calculate the Fold change (FC) and P-value for it, Can I calculate FC individually for each time. For example (30min_FC,1hr_FC, 2hr_FC and 4hr_FC) ...
genome R next-gen rna-seq gene written 6 months ago by Muhammad Haseeb50
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Comment: C: How to get Gene symbols from feature number?
... Dear H.Mon, Thank you very much for a nice answer. Actually, my concern is that **can I use the differential expressed gene (DEG) supplementary file of this data for further analysis**? If yes, then the supplementary file is missing the gene symbols and they mentioned only the feature number and gen ...
written 7 months ago by Muhammad Haseeb50
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How to get Gene symbols from feature number?
... I am working on microarray data analysis of B cell (GSE2050). They didn't mention the probe set id,...etc (unique identifier) for gene annotation/gene symbol, they analyze the data through significance analysis of Microarray (SAM) and reported DEG (2937) in the supplementary file as follows [feature ...
gene R next-gen chip-seq rna-seq written 7 months ago by Muhammad Haseeb50 • updated 7 months ago by h.mon9.2k
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Comment: C: Reliability of Microarray data analysis through "Altanalyze" tool.
... Dear Nathan, Thank you very much for such a nice share. I will follow your suggestions and will contact if needed. Thank you, Regards, ...
written 10 months ago by Muhammad Haseeb50
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Comment: C: Reliability of Microarray data analysis through "Altanalyze" tool.
... Thank you very much for providing the link. Regards, ...
written 10 months ago by Muhammad Haseeb50
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Reliability of Microarray data analysis through "Altanalyze" tool.
... Hey Everyone, I hope you all are doing good. I am interested in analyzing microarray data of tumor gene expression. I want to identify the differentially expressed gene among **wildtype** VS **Knockout**. And to check their role, I used the **AltAnalyze** tool for normalization, heatmap, clustering ...
genome R next-gen rna-seq software error written 10 months ago by Muhammad Haseeb50
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Identifying differentially expressed genes from Wild type and Knockout data
... Dear Researcher, I am analyzing the microarray data of mouse_402 by using **Affymetrix console Expression** and normalized through RMA.We have total 8 chip, **4 Wild type** (WT day 4 (r1),WT day 4 (r2),WT day 6 (r1), WT day 6 (r2)) and **4 Knockout** similarly (KO day 4 (r1)...........). After gene ...
#microarray #deg #t-test #fold change rna-seq written 10 months ago by Muhammad Haseeb50

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