Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: urmi208

gravatar for urmi208
urmi208 • 30
Reputation:
30
Status:
New User
Location:
Last seen:
1 year, 1 month ago
Joined:
3 years, 7 months ago
Email:
u******@gmail.com

Posts by urmi208

<prev • 14 results • page 1 of 2 • next >
0
votes
0
answers
1.8k
views
0
answers
Comment: C: MAKER annotation gives weird results
... I am facing similar problem. How did you solve yours? I would be grateful if you could share the solution. Thanks. ...
written 21 months ago by urmi208 • 30
0
votes
0
answers
523
views
0
answers
Gene loss in subsequent round of maker for fungal genome annotation
... Hello, I am trying to run maker2.31.9 on a fungal genome. I have got transcript and protein sequences from a related species using parameters "altest" and "protein" in the maker_opts.ctl file. Here is the protocol I am using: 1. Run maker with repeat masking and providing transcript and protein se ...
annotation genome assembly maker written 21 months ago by urmi208 • 30
0
votes
1
answer
1.6k
views
1
answers
Comment: C: Different results with edgeR when adding gene symbols
... Thank you Mma. It makes sense. I will give this a go. ...
written 2.6 years ago by urmi208 • 30
1
vote
1
answer
1.6k
views
1
answers
Comment: C: Different results with edgeR when adding gene symbols
... Thanks Santosh. Very helpful ...
written 2.6 years ago by urmi208 • 30
0
votes
1
answer
1.6k
views
1
answers
Comment: C: Different results with edgeR when adding gene symbols
... Aha! There is merging issue. Any ideas how can I fix this? ...
written 2.6 years ago by urmi208 • 30
0
votes
1
answer
1.6k
views
1
answers
Comment: C: Different results with edgeR when adding gene symbols
... Before adding gene names: ensembl_gene_id logFC logCPM PValue FDR ENSGACG00000007157 3.24915717386252 1.07342942182991 0.000618728695167078 1 ENSGACG00000013912 2.3468671394398 0.373720501233804 0.0113007333301586 1 ENSGACG00000001321 2.21861945153189 0.972005925991169 0.01313771363 ...
written 2.6 years ago by urmi208 • 30
0
votes
1
answer
1.6k
views
1
answers
Comment: C: Different results with edgeR when adding gene symbols
... Thanks for your reply. I have 22460 rows both before and after adding the gene names ...
written 2.6 years ago by urmi208 • 30
5
votes
1
answer
1.6k
views
1
answer
Different results with edgeR when adding gene symbols
... Hello, I am trying to get the gene names along with the Ensembl gene ids in the final edgeR output. The problem is: I am seeing different results when I add the gene symbols and when I don't. Here is example code without gene symbols library(edgeR) exp2 <-read.table('exp2',header=TRUE) ...
biomart rna-seq edger written 2.6 years ago by urmi208 • 30 • updated 2.6 years ago by MMa • 280
0
votes
1
answer
1.5k
views
1
answers
Comment: C: insert size discrepencies using bwa backtrack and bwa mem
... Thank you for the explanation, Heng. I have already trimmed the adapters but may be there are still some traces left in there. I will have a look. ...
written 3.5 years ago by urmi208 • 30
0
votes
1
answer
1.5k
views
1
answers
Comment: C: insert size discrepencies using bwa backtrack and bwa mem
... Sure. I will give that a go and let you know what I get. ...
written 3.5 years ago by urmi208 • 30

Latest awards to urmi208

Popular Question 14 months ago, created a question with more than 1,000 views. For Different results with edgeR when adding gene symbols
Popular Question 20 months ago, created a question with more than 1,000 views. For insert size discrepencies using bwa backtrack and bwa mem
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1780 users visited in the last hour