User: Max Haase

gravatar for Max Haase
Max Haase40
Reputation:
40
Status:
New User
Location:
UW Madison
Last seen:
3 years, 4 months ago
Joined:
3 years, 10 months ago
Email:
m*******@wisc.edu

Posts by Max Haase

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Help needed running BUSCO
... Thanks for the info, I was working with a postdoc in my lab on the sed -i issue yesterday for a few hours and we agreed that I should just use BUSCO on Linux. But maybe you have some further insight, when I run with the modified line "subprocess.call('sed -i \'\' -e \'1,3d\' %saugustus/%s' % (mainou ...
written 3.8 years ago by Max Haase40
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Comment: C: Augustus install mac
... Thanks Jon for the advice! I was able to compile bam2hits and filterBam successfully and it appears that augustus is working properly. ...
written 3.8 years ago by Max Haase40
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Comment: C: Help needed running BUSCO
... My command is: Maxs-MacBook:sample_data maxhaase$ python3 /Users/maxhaase/School/Phylo563/BUSCO_v1.2/BUSCO_v1.2.py -in target.fa -o sample -l ./example -m genome ...
written 3.8 years ago by Max Haase40
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Help needed running BUSCO
... Hi I am trying to get BUSCO v1.2 up and running using their provided sample data and I am running into a few problems. Firstly, I get "Error: Cannot write to Augustus directory ", Im certain I have provide read and write permission to the augustus config file. After that prints, BUSCO seems to run ...
software error written 3.8 years ago by Max Haase40 • updated 2.3 years ago by Myggan20
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Augustus install mac
... I'm trying to compile AUGUSTUS on my mac (10.10.4) and I fail to compile bam2hints and filterBam executables. I get this error: g++ -Wall -O2 -c bam2hints.cc -o bam2hints.o -I/usr/include/bamtools bam2hints.cc:16:10: fatal error: 'api/BamReader.h' file not found include 1 error gene ...
genome software error written 3.8 years ago by Max Haase40 • updated 3.8 years ago by Jon330

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