User: glady

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glady260
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Posts by glady

<prev • 128 results • page 1 of 13 • next >
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(Closed) Join two files with a common column
... file 1: V1 1111 2222 4444 file 2: V1 V2 V3 a 1111 act b 2222 asd c 3333 qwe d 4444 zxc I want the output as: V1 V2 1111 act 2222 asd 4444 zxc I want to join the V1 column from file1 to the V2 column off file2, and get the desired output. Is there a quick way by linux commands to d ...
software error R written 5 weeks ago by glady260
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Comment: C: Genetic alterations of certain Genes in Tumor
... Thank you for the reply sir. Does solid tumor resembles to samples taken from Bone? ...
written 6 weeks ago by glady260
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Genetic alterations of certain Genes in Tumor
... Hello everyone, I want to see the frequency of genetic alterations for certain genes in tumors such as solid tumors, leukemia. Where can I find some datasets (Normal and tumor, if possible their expression counts) for the above-mentioned cancer types? Thank you! ...
gene rna-seq written 6 weeks ago by glady260 • updated 6 weeks ago by JC12k
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Finding biomarkers between tumor and normal samples
... Hello everyone, I have a total RNASeq data of 10 PDAC tumors and Normal samples. The DE analysis was performed by DESeq2, and I have a list of all the differentially expressed genes in the dataset. 1) How am I suppose to find biomarker genes which are significantly enriched in the Tumor condition ...
gene rna-seq written 7 weeks ago by glady260
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protein - lncRNA interactions
... Hello everyone, I have an RNAseq data of a human cell line, with three experimental conditions(having 3 replicates each). The depth of all the samples is >80M. The same samples were also sequenced for small RNA(miRNAs), with help of some miRNA target prediction algorithms and databases I was abl ...
rna-seq written 3 months ago by glady260
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Assemblers and tools for MetaGenome and Metatranscriptomcs analysis
... Hello, I new to this field of Meta-omics. I do wanna know some recently updated tools/assemblers used for MetaGenome and MetaTransrciptomics analysis and annotation. Thanks for your help. ...
assembly next-gen alignment written 5 months ago by glady260
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Comment: C: miRNA target prediction
... Thank you very much for the suggestion, sir. Unfortunately, the link for the paper is broken. Can you please share it again? ...
written 9 months ago by glady260
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miRNA target prediction
... Hello all, I'm working on Human miRNA's, and I'm trying to predict miRNA targets in coding and non-coding genes. The algorithms(MiRanda, RNAhybrid, PITA) produce a lot of false positives and also there results differ significantly. So, now I use some online databases(TargetSCAN, starBase, miRtarbas ...
rna-seq written 9 months ago by glady260 • updated 9 months ago by Asaf8.5k
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Comment: C: Queries regarding RNASeq sequencing
... Thank you for your useful suggestions. Can you share some links with me about such literatures, it would be really helpful. ...
written 13 months ago by glady260
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Comment: C: Queries regarding RNASeq sequencing
... I'm sorry but can you provide me some more details on this point. How can I cluster the samples on their expression? Are there any kinds of literature where they have performed similar work? ...
written 13 months ago by glady260

Latest awards to glady

Popular Question 5 weeks ago, created a question with more than 1,000 views. For Circos - genome alignment
Popular Question 3 months ago, created a question with more than 1,000 views. For Circos - genome alignment
Popular Question 3 months ago, created a question with more than 1,000 views. For Mitochondrial genome samples
Popular Question 5 months ago, created a question with more than 1,000 views. For Circos - genome alignment
Popular Question 6 months ago, created a question with more than 1,000 views. For Retriving compounds name from KEGG IDs
Popular Question 6 months ago, created a question with more than 1,000 views. For Circos - genome alignment
Popular Question 9 months ago, created a question with more than 1,000 views. For Using COG database
Popular Question 9 months ago, created a question with more than 1,000 views. For Extraction of 16S rRNA gene
Popular Question 12 months ago, created a question with more than 1,000 views. For Protein Structure tools
Popular Question 12 months ago, created a question with more than 1,000 views. For Using COG database
Great Question 13 months ago, created a question with more than 5,000 views. For Using COG database
Popular Question 14 months ago, created a question with more than 1,000 views. For Genome assembly tools
Popular Question 17 months ago, created a question with more than 1,000 views. For Genome assembly tools
Popular Question 17 months ago, created a question with more than 1,000 views. For Using COG database
Popular Question 22 months ago, created a question with more than 1,000 views. For Ray Meta assembler
Popular Question 22 months ago, created a question with more than 1,000 views. For Ray Meta assembler
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Ray Meta assembler
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Ray Meta assembler
Centurion 2.1 years ago, created 100 posts.
Popular Question 2.7 years ago, created a question with more than 1,000 views. For MAUVE - genome alignment
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Genome assembly tools
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Using COG database
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Extraction of 16S rRNA gene
Student 2.7 years ago, asked a question with at least 3 up-votes. For Russian gut microbiome
Student 2.7 years ago, asked a question with at least 3 up-votes. For Human gut metagenome data

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