User: acc.inpro321

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acc.inpro32130
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Posts by acc.inpro321

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(Closed) Why can't mutated RAS get inactivated by GTPase?
... **Why can't mutated RAS get inactivated by GTPase?** **Why don't we have any inhibitors for RAS-GTP binding?** I want to open this post as forum for further discussion: **why is RAS undruggable?** ...
gtp ras mutation map-kinase cancer written 3.0 years ago by acc.inpro32130
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How to preprocess the mirna seq read count?
... I am new to bioinformatics, and to learn more, I am starting by working on a project. I collected miRNA sequence data from the TCGA and it has a text file for each sample and the file includes: miRNA_ID read_count reads_per_million_miRNA_mapped cross-mapped Following is the sample content ...
bioinformatics preprocessing mirna-seq written 3.3 years ago by acc.inpro32130
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Comment: C: Where do I find the label, whether this file data corroborates to a healthy tiss
... Hello Sir, I downloaded the data, but I am not able to find any normal matched sample, then how should I train my algorithm; could you please suggest some other sites to get miRNA data from; both cancer samples and tumor samples. Thanks in advance! ...
written 3.3 years ago by acc.inpro32130
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Comment: C: How to use TCGA miRNA seq data?
... Sir, how to know whether a particular sample is healthy or cancerous? I just see expression data and no label. Where can I find it? ...
written 3.3 years ago by acc.inpro32130
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Where do I find the label, whether this file data corroborates to a healthy tissue or a cancerous one in tcga data?
... I downloaded the TCGA dataset for LUAD (Lung Cancer), I find each file with miRNA sequence data like readCount and parts per million value and their are around 123 samples. But where do I find the label, whether this sample is cancerous or not? Sample Files TCGA-05-4244-01A-01T-1108-13.hg19.mirbas ...
tcga microrna-seq written 3.3 years ago by acc.inpro32130 • updated 3.3 years ago by Khader Shameer18k
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Comment: C: Machine Learning - RNAseq
... Sir, how do we get the counts from RNA-seq data? I download samples from TCGA, could you please tell me how to convert RNA-seq data to expression and use it for machine learning? Thanks in advance ...
written 3.3 years ago by acc.inpro32130
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Comment: C: how can a machine learning model be applied to microRNA-seq data?
... Hello sir, I am unable to figure out how to analyse micro-RNA data, thence I am very unsure about how to train the data. Infact, I am not very clear about microRNA-seq data. I would have no problems working with expression data but unable to figure out how to use miRNA-seq data. kindly help me! ...
written 3.3 years ago by acc.inpro32130
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how can a machine learning model be applied to microRNA-seq data?
... I am a high school junior working on a research project, I had a couple of doubts and had a trouble in getting it resolved. I hope the community could help me! Till now, I have worked on Machine Learning project in which I could train the model given gene expression values as input and a label as ou ...
tcga next-gen mrna-seq rna-seq machine learning written 3.3 years ago by acc.inpro32130 • updated 3.3 years ago by Benn7.5k

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