User: Suzanne
Suzanne • 60
- Reputation:
- 60
- Status:
- Trusted
- Location:
- Dundee, Scotland
- Last seen:
- 1 year, 8 months ago
- Joined:
- 3 years, 5 months ago
- Email:
- s*****@dundee.ac.uk
Posts by Suzanne
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... Jalview (http://www.jalview.org/) uses the fast and pretty accurate Jpred secondary structure predictor, there is a video on this on YouTube https://youtu.be/z5cVjR9Q3Mw
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written 20 months ago by
Suzanne • 60
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... There is a video on secondary structure prediction of proteins in Jalview on YouTube, the link is https://youtu.be/z5cVjR9Q3Mw
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written 20 months ago by
Suzanne • 60
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... Hi, Are you using the latest version of Jalview?
Memory can be issue in java based programs. You can run Jalview at different memory settings if you visit the web page http://www.jalview.org/development/development-builds then click on the memory size for your pc eg 1G, 2G or 15G. ...
written 20 months ago by
Suzanne • 60
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... There is Jalview video demonstrating icolouring sequences at https://youtu.be/b0M0eQf6qFY, Jalview can be accessed from http://www.jalview.org/ ...
written 20 months ago by
Suzanne • 60
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... Jalview can export alignments as png files as well as SVG and EPS formats. The web site is http://www.jalview.org/ and there are YouTube videos on this topic https://youtu.be/jVXJws8xPkI
...
written 20 months ago by
Suzanne • 60
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Answer:
A: aligning two MSA
... Hi, you run a range of different MSA alignments in Jalview. It allows multiple views of the same sequences that have been aligned by different methods. Jalview also has an option where sequences can be grouped and represented by single sequence. In theory it would be possible to then align these rep ...
written 20 months ago by
Suzanne • 60
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Answer:
A: alignment of many sequences
... Jalview is a free protein and nucleic acid sequence alignment visualisation software that can align hundreds of sequences. I suggest you check out the YouTube Jalview On-Line training videos at https://www.youtube.com/channel/UCIjpnvZB770yz7ftbrJ0tfw.
The program can be launch from http://www.jalvie ...
written 2.7 years ago by
Suzanne • 60
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... Jalview is a free protein and nucleic acid sequence alignment visualisation software that can compare subsets of sequences in multiple alignments. I suggest you check out the video on 'selecting residues, sequences and columns of proteins' (https://youtu.be/WUTlDJO9xxQ). This is one video in Jalview ...
written 2.7 years ago by
Suzanne • 60
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... Jalview is a free protein and nucleic acid sequence alignment visualisation software. It can be launch from http://www.jalview.org/. There are several Jalview 'how-to' videos on the Jalview YouTube training channel (https://www.youtube.com/channel/UCIjpnvZB770yz7ftbrJ0tfw). I recommend the one on 'S ...
written 2.7 years ago by
Suzanne • 60
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... Here is link to a Jalview video about editing sequences: https://youtu.be/ZI4NW6kQeHc. It is part of 'Selecting and Editing Sequences' in Jalview YouTube playlist https://www.youtube.com/playlist?list=PLpU3VZmUmrT27N2Uy32qszCOoznvN-07N. ...
written 2.7 years ago by
Suzanne • 60
Latest awards to Suzanne
Scholar
2.7 years ago,
created an answer that has been accepted.
For A: compare subsets of sequences in multiple alignments
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