User: Suzanne

gravatar for Suzanne
Suzanne50
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50
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Location:
Dundee, Scotland
Last seen:
4 months, 1 week ago
Joined:
2 years, 1 month ago
Email:
s*****@dundee.ac.uk

Posts by Suzanne

<prev • 24 results • page 1 of 3 • next >
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Answer: A: Where Can I Get The Secondary Structure Of A Protein?
... Jalview (http://www.jalview.org/) uses the fast and pretty accurate Jpred secondary structure predictor, there is a video on this on YouTube https://youtu.be/z5cVjR9Q3Mw ...
written 4 months ago by Suzanne50
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Answer: A: Linear Or 2D Representation Of Protein Sequence Secondary Structure
... There is a video on secondary structure prediction of proteins in Jalview on YouTube, the link is https://youtu.be/z5cVjR9Q3Mw ...
written 4 months ago by Suzanne50
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Answer: A: Jalview crashes when I resize window, any fixes?
... Hi, Are you using the latest version of Jalview? Memory can be issue in java based programs. You can run Jalview at different memory settings if you visit the web page http://www.jalview.org/development/development-builds then click on the memory size for your pc eg 1G, 2G or 15G. ...
written 4 months ago by Suzanne50
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Answer: A: Color code protein sequence alignment result to a reference sequence in black an
... There is Jalview video demonstrating icolouring sequences at https://youtu.be/b0M0eQf6qFY, Jalview can be accessed from http://www.jalview.org/ ...
written 4 months ago by Suzanne50
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Answer: A: Is there any software to convert clustal alignment file to png image
... Jalview can export alignments as png files as well as SVG and EPS formats. The web site is http://www.jalview.org/ and there are YouTube videos on this topic https://youtu.be/jVXJws8xPkI ...
written 4 months ago by Suzanne50
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Answer: A: aligning two MSA
... Hi, you run a range of different MSA alignments in Jalview. It allows multiple views of the same sequences that have been aligned by different methods. Jalview also has an option where sequences can be grouped and represented by single sequence. In theory it would be possible to then align these rep ...
written 4 months ago by Suzanne50
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Answer: A: alignment of many sequences
... Jalview is a free protein and nucleic acid sequence alignment visualisation software that can align hundreds of sequences. I suggest you check out the YouTube Jalview On-Line training videos at https://www.youtube.com/channel/UCIjpnvZB770yz7ftbrJ0tfw. The program can be launch from http://www.jalvie ...
written 16 months ago by Suzanne50
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Answer: A: compare subsets of sequences in multiple alignments
... Jalview is a free protein and nucleic acid sequence alignment visualisation software that can compare subsets of sequences in multiple alignments. I suggest you check out the video on 'selecting residues, sequences and columns of proteins' (https://youtu.be/WUTlDJO9xxQ). This is one video in Jalview ...
written 16 months ago by Suzanne50
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Answer: A: Standalone Multiple Sequence alignment tool
... Jalview is a free protein and nucleic acid sequence alignment visualisation software. It can be launch from http://www.jalview.org/. There are several Jalview 'how-to' videos on the Jalview YouTube training channel (https://www.youtube.com/channel/UCIjpnvZB770yz7ftbrJ0tfw). I recommend the one on 'S ...
written 16 months ago by Suzanne50
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Answer: A: Trimming gapped ends from a multiple alignment
... Here is link to a Jalview video about editing sequences: https://youtu.be/ZI4NW6kQeHc. It is part of 'Selecting and Editing Sequences' in Jalview YouTube playlist https://www.youtube.com/playlist?list=PLpU3VZmUmrT27N2Uy32qszCOoznvN-07N. ...
written 16 months ago by Suzanne50

Latest awards to Suzanne

Scholar 16 months ago, created an answer that has been accepted. For A: compare subsets of sequences in multiple alignments

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