User: montoya.oscar

montoya.oscar • 50

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Posts by montoya.oscar

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Answer: A: cutadapt loop and paired-end reads

... Based on h.mod's hint, the following code removes three pairs of primers (three forward and thre reverse) and their reverse complements (simply the same primers sequences but backwards): for i in *_R1_001.fastq.gz do SAMPLE=$(echo ${i} | sed "s/_R1_\001\.fastq\.gz//") echo ${SA ...

written 9 months ago by montoya.oscar • 50

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Answer: A: Pathway Analysis In R

... Take a look at clusterProfiler, DOSE, and STRINGdb packages, all in Bioconductor. ...

written 20 months ago by montoya.oscar • 50

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Answer: A: How to deal with demultiplexed Miseq pair-end (2*250bp) 16S data using QIIME?

... Hi all, I know this's an old question, but many people face this same mapping file issue fairly often. This is a link to QIIME's support site explaining how to deal with Illumina paired-end output (only to extend nkuyfq answer): http://qiime.org/tutorials/processing_illumina_data.html ...

written 2.6 years ago by montoya.oscar • 50

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Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Pathway Analysis In R